Expression of 1-1-8.1.11.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.20128 | 0.463 |
27DAP/17DAP | 0.94082 | 0.882 |
39DAP/27DAP | 0.91336 | 0.631 |
41DAP/39DAP | 0.80271 | 0.358 |
42DAP/41DAP | 1.44117 | 0.471 |
43DAP/42DAP | 0.85119 | 0.783 |
47DAP/43DAP | 1.44852 | 0.497 |
52DAP/47DAP | 0.70468 | 0.28 |
57DAP/52DAP | 0.78969 | 0.779 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.77703 | 0.033 |
17DAP/reference | 1.06881 | 0.546 |
27DAP/reference | 1.12891 | 0.509 |
39DAP/reference | 0.99522 | 0.885 |
41DAP/reference | 1.16289 | 0.187 |
42DAP/reference | 1.00397 | 0.608 |
43DAP/reference | 1.17774 | 0.306 |
47DAP/reference | 1.00037 | 0.636 |
52DAP/reference | 0.82109 | 0.121 |
57DAP/reference | 1.03467 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.88325 | 0.135 |
27DAP/17DAP | 1.12104 | 0.751 |
39DAP/27DAP | 0.81583 | 0.146 |
41DAP/39DAP | 0.93357 | 0.713 |
42DAP/41DAP | 1.01784 | 0.925 |
43DAP/42DAP | 0.95216 | 0.503 |
47DAP/43DAP | 0.85624 | 0.254 |
52DAP/47DAP | 1.28272 | 0.478 |
57DAP/52DAP | 0.84985 | 0.315 |
57DAP/7DAP | 1.6469 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81972 | 0.157 |
17DAP/reference | 0.86559 | 0.013 |
27DAP/reference | 0.84745 | 0.025 |
39DAP/reference | 0.89643 | 0.017 |
41DAP/reference | 0.91127 | 0.09 |
42DAP/reference | 0.91696 | 0.044 |
43DAP/reference | 0.87337 | 0.026 |
47DAP/reference | 0.90179 | 0.383 |
52DAP/reference | 0.76991 | 0.022 |
57DAP/reference | 0.85955 | 0.038 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00151 | 0.786 |
17DAP/reference | 0.83458 | 0.164 |
27DAP/reference | 0.79413 | 0.129 |
39DAP/reference | 0.72506 | 0.072 |
41DAP/reference | 1.00317 | 0.545 |
42DAP/reference | 0.82253 | 0.121 |
43DAP/reference | 0.786 | 0.054 |
47DAP/reference | 1.10064 | 0.426 |
52DAP/reference | 0.90934 | 0.078 |
57DAP/reference | 0.88819 | 0.46 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88078 | 0.158 |
17DAP/reference | 0.98236 | 0.696 |
27DAP/reference | 0.81487 | 0.036 |
39DAP/reference | 0.74866 | 0.054 |
41DAP/reference | 1.01322 | 0.984 |
42DAP/reference | 0.86496 | 0.036 |
43DAP/reference | 0.81447 | 0.116 |
47DAP/reference | 1.05027 | 0.847 |
52DAP/reference | 1.164 | 0.241 |
57DAP/reference | 0.8129 | 0.044 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09266 | 0.966 |
26DAP/20DAP | 0.79723 | 0.512 |
34DAP/26DAP | 1.07387 | 1 |
51DAP/34DAP | 1.66176 | 0.303 |
52DAP/51DAP | 0.76394 | 0.151 |
53DAP/52DAP | 3.35053 | 0.019 |
55DAP/53DAP | 1.14401 | 0.415 |
57DAP/55DAP | 2.00571 | 0.643 |
62DAP/57DAP | 0.37703 | 0.004 |
68DAP/62DAP | 1.75668 | 0.657 |
68DAP/14DAP | 1.7826 | 0.694 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.08541 | 0.663 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.07003 | 0.044 |
Mature Green Tomato/Ripe Tomato | 1.25811 | 0.577 |
Immature Eggplant/Mature Eggplant | 12.5133 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.82643 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.23827 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.39778 | 0.877 |
1-1-2/M82 | 1.24208 | 1 |
12-2/M82 | 1.22653 | 0.61 |
12-4/M82 | 1.28568 | 1 |
1-3/M82 | 1.41115 | 0.277 |
2-1-1/M82 | 0.75602 | 0.465 |
2-1/M82 | 0.93294 | 1 |
2-6/M82 | 0.83906 | 1 |
3-2/M82 | 1.33756 | |
4-1-1/M82 | 0.96757 | 1 |
4-1/M82 | 0.90907 | 1 |
4-3-2/M82 | 0.83671 | 0.487 |
4-3/M82 | 1.2083 | 1 |
5-3/M82 | 0.88357 | 1 |
6-2/M82 | 1.31948 | 1 |
6-3/M82 | 0.96351 | 1 |
7-1/M82 | 1.12343 | 0.598 |
7-2/M82 | 0.93254 | 0.881 |
9-3-2/M82 | 0.86224 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.03623 | 1 |
IL2-6/WTpooled | 0.77607 | 0.473 |
IL7-5/WTpooled | 0.68976 | 1 |
IL7-3/WTpooled | 1.62374 | 1 |
IL12-4/WTpooled | 1.3072 | 0.595 |
IL1-4/WTpooled | 0.84359 | 0.699 |
WT/WTpooled | 1.14187 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.63293 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02189 | 1 |
DC3000/delta hrp 6h | 0.92685 | 0.95 |
DC3000/delta hrp 12h | 1.3207 | 1 |
DC3000/delta hrp 24h | 1.03394 | 0.84 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.98082 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0108 | 1 |
Var 0h | 0.91366 | 0.933 |
Var 12h I row2-row1 | 1.02599 | 1 |
Var 12h NI row2-row1 | 1.17409 | 0.649 |
Var 36h I row2-row1 | 1.12992 | 0.908 |
Var 36h NI row2-row1 | 0.79367 | 0.329 |
Var 60h I row2-row1 | 0.86461 | 0.374 |
Var 60h NI row2-row1 | 0.74293 | 0.866 |
Time course 0hI-0hNI | 0.90369 | 0.253 |
Time course 12hI-12hNI | 1.05859 | 0.611 |
Time course 36hI-36hNI | 0.97966 | 0.589 |
Time course 60hI-60hNI | 0.92938 | 0.319 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.84704 | 0.299 |
transgenic ySAMdc/azygous control (breaker) | 0.65665 | 0.173 |
transgenic ySAMdc/azygous control (red) | 1.26398 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.063 | 0.35 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.31209 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.64102 | 0.172 |
Manapal/WT (break) | 0.6515 | 0.299 |
Manapal/WT (red) | 0.41594 | 0.181 |
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