Expression of 1-1-8.1.11.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.201280.463
27DAP/17DAP0.940820.882
39DAP/27DAP0.913360.631
41DAP/39DAP0.802710.358
42DAP/41DAP1.441170.471
43DAP/42DAP0.851190.783
47DAP/43DAP1.448520.497
52DAP/47DAP0.704680.28
57DAP/52DAP0.789690.779

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.777030.033
17DAP/reference1.068810.546
27DAP/reference1.128910.509
39DAP/reference0.995220.885
41DAP/reference1.162890.187
42DAP/reference1.003970.608
43DAP/reference1.177740.306
47DAP/reference1.000370.636
52DAP/reference0.821090.121
57DAP/reference1.034671

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.883250.135
27DAP/17DAP1.121040.751
39DAP/27DAP0.815830.146
41DAP/39DAP0.933570.713
42DAP/41DAP1.017840.925
43DAP/42DAP0.952160.503
47DAP/43DAP0.856240.254
52DAP/47DAP1.282720.478
57DAP/52DAP0.849850.315
57DAP/7DAP1.64691

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.819720.157
17DAP/reference0.865590.013
27DAP/reference0.847450.025
39DAP/reference0.896430.017
41DAP/reference0.911270.09
42DAP/reference0.916960.044
43DAP/reference0.873370.026
47DAP/reference0.901790.383
52DAP/reference0.769910.022
57DAP/reference0.859550.038

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.001510.786
17DAP/reference0.834580.164
27DAP/reference0.794130.129
39DAP/reference0.725060.072
41DAP/reference1.003170.545
42DAP/reference0.822530.121
43DAP/reference0.7860.054
47DAP/reference1.100640.426
52DAP/reference0.909340.078
57DAP/reference0.888190.46

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.880780.158
17DAP/reference0.982360.696
27DAP/reference0.814870.036
39DAP/reference0.748660.054
41DAP/reference1.013220.984
42DAP/reference0.864960.036
43DAP/reference0.814470.116
47DAP/reference1.050270.847
52DAP/reference1.1640.241
57DAP/reference0.81290.044

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.092660.966
26DAP/20DAP0.797230.512
34DAP/26DAP1.073871
51DAP/34DAP1.661760.303
52DAP/51DAP0.763940.151
53DAP/52DAP3.350530.019
55DAP/53DAP1.144010.415
57DAP/55DAP2.005710.643
62DAP/57DAP0.377030.004
68DAP/62DAP1.756680.657
68DAP/14DAP1.78260.694

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.085410.663

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.070030.044
Mature Green Tomato/Ripe Tomato1.258110.577
Immature Eggplant/Mature Eggplant12.51330.05
Ripe Pepper/Ripe Tomato0.826430.293
Mature Eggplant/Ripe Tomato0.238271

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.397780.877
1-1-2/M821.242081
12-2/M821.226530.61
12-4/M821.285681
1-3/M821.411150.277
2-1-1/M820.756020.465
2-1/M820.932941
2-6/M820.839061
3-2/M821.33756
4-1-1/M820.967571
4-1/M820.909071
4-3-2/M820.836710.487
4-3/M821.20831
5-3/M820.883571
6-2/M821.319481
6-3/M820.963511
7-1/M821.123430.598
7-2/M820.932540.881
9-3-2/M820.862240.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.036231
IL2-6/WTpooled0.776070.473
IL7-5/WTpooled0.689761
IL7-3/WTpooled1.623741
IL12-4/WTpooled1.30720.595
IL1-4/WTpooled0.843590.699
WT/WTpooled1.141871

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.632930.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.021891
DC3000/delta hrp 6h0.926850.95
DC3000/delta hrp 12h1.32071
DC3000/delta hrp 24h1.033940.84

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.980821

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.01081
Var 0h0.913660.933
Var 12h I row2-row11.025991
Var 12h NI row2-row11.174090.649
Var 36h I row2-row11.129920.908
Var 36h NI row2-row10.793670.329
Var 60h I row2-row10.864610.374
Var 60h NI row2-row10.742930.866
Time course 0hI-0hNI0.903690.253
Time course 12hI-12hNI1.058590.611
Time course 36hI-36hNI0.979660.589
Time course 60hI-60hNI0.929380.319

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.847040.299
transgenic ySAMdc/azygous control (breaker)0.656650.173
transgenic ySAMdc/azygous control (red)1.263980.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.0630.35

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.312090.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.641020.172
Manapal/WT (break)0.65150.299
Manapal/WT (red)0.415940.181