Expression of 1-1-8.1.12.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.22396 | 0.588 |
27DAP/17DAP | 1.24581 | 0.825 |
39DAP/27DAP | 1.1847 | 0.893 |
41DAP/39DAP | 1.30655 | 0.597 |
42DAP/41DAP | 1.57607 | 0.806 |
43DAP/42DAP | 1.08137 | 1 |
47DAP/43DAP | 0.73094 | 0.242 |
52DAP/47DAP | 1.24009 | 0.545 |
57DAP/52DAP | 1.27515 | 0.93 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85247 | 0.103 |
17DAP/reference | 1.11504 | 0.239 |
27DAP/reference | 1.07862 | 0.529 |
39DAP/reference | 1.23289 | 0.169 |
41DAP/reference | 1.12535 | 0.587 |
42DAP/reference | 1.13704 | 0.182 |
43DAP/reference | 1.1208 | 0.471 |
47DAP/reference | 1.30205 | 0.001 |
52DAP/reference | 0.96573 | 0.461 |
57DAP/reference | 1.0262 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.20059 | 0.492 |
27DAP/17DAP | 0.87348 | 0.648 |
39DAP/27DAP | 1.36839 | 0.147 |
41DAP/39DAP | 0.86142 | 0.567 |
42DAP/41DAP | 1.5478 | 0.006 |
43DAP/42DAP | 1.82798 | 0.015 |
47DAP/43DAP | 1.0038 | 0.997 |
52DAP/47DAP | 1.38572 | 0.382 |
57DAP/52DAP | 0.97332 | 0.705 |
57DAP/7DAP | 0.89252 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88927 | 0.246 |
17DAP/reference | 0.92923 | 0.124 |
27DAP/reference | 0.95496 | 0.231 |
39DAP/reference | 1.03399 | 0.819 |
41DAP/reference | 0.95633 | 0.357 |
42DAP/reference | 1.01903 | 1 |
43DAP/reference | 1.07045 | 0.386 |
47DAP/reference | 1.26446 | 0.055 |
52DAP/reference | 1.16418 | 0.008 |
57DAP/reference | 1.07982 | 0.288 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07006 | 0.724 |
17DAP/reference | 1.1186 | 0.229 |
27DAP/reference | 0.8888 | 0.139 |
39DAP/reference | 1.10305 | 0.848 |
41DAP/reference | 0.89447 | 0.11 |
42DAP/reference | 1.02708 | 0.969 |
43DAP/reference | 1.12424 | 0.633 |
47DAP/reference | 1.14589 | 0.067 |
52DAP/reference | 1.06176 | 0.882 |
57DAP/reference | 1.1293 | 0.887 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81828 | 0.054 |
17DAP/reference | 1.03322 | 0.839 |
27DAP/reference | 0.91399 | 0.302 |
39DAP/reference | 1.00232 | 0.889 |
41DAP/reference | 1.00839 | 1 |
42DAP/reference | 1.0639 | 0.68 |
43DAP/reference | 1.13982 | 0.655 |
47DAP/reference | 1.25341 | 0.013 |
52DAP/reference | 1.09072 | 0.448 |
57DAP/reference | 1.14279 | 0.304 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0497 | 1 |
26DAP/20DAP | 0.85613 | 0.512 |
34DAP/26DAP | 1.42839 | 0.126 |
51DAP/34DAP | 1.03239 | 0.909 |
52DAP/51DAP | 1.18324 | 0.733 |
53DAP/52DAP | 1.21531 | 0.688 |
55DAP/53DAP | 0.96375 | 0.864 |
57DAP/55DAP | 0.84428 | 0.433 |
62DAP/57DAP | 1.25032 | 0.8 |
68DAP/62DAP | 0.93788 | 0.769 |
68DAP/14DAP | 1.42523 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.52924 | 0.02 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.76285 | |
Mature Green Tomato/Ripe Tomato | 0.81346 | 0.06 |
Immature Eggplant/Mature Eggplant | 0.85544 | 0.223 |
Ripe Pepper/Ripe Tomato | 0.72813 | 1 |
Mature Eggplant/Ripe Tomato | 0.38115 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.86466 | 0.708 |
1-1-2/M82 | 0.93584 | 1 |
12-2/M82 | 1.04952 | 1 |
12-4/M82 | 0.84523 | 0.619 |
1-3/M82 | 1.1126 | 0.26 |
2-1-1/M82 | 0.77894 | 0.784 |
2-1/M82 | 0.75912 | 0.325 |
2-6/M82 | 0.89634 | 1 |
3-2/M82 | 1.22226 | |
4-1-1/M82 | 0.84866 | |
4-1/M82 | 1.41407 | |
4-3-2/M82 | 0.93657 | 1 |
4-3/M82 | 0.66503 | 0.374 |
5-3/M82 | 0.78635 | 0.419 |
6-2/M82 | 0.6698 | 0.497 |
6-3/M82 | 1.11241 | 1 |
7-1/M82 | 1.14195 | 1 |
7-2/M82 | 0.85443 | 0.54 |
9-3-2/M82 | 0.65726 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.47346 | 0.277 |
IL2-6/WTpooled | 0.56322 | 0.348 |
IL7-5/WTpooled | 0.71999 | 1 |
IL7-3/WTpooled | 1.29174 | 1 |
IL12-4/WTpooled | 1.0545 | 0.891 |
IL1-4/WTpooled | 0.86189 | 0.422 |
WT/WTpooled | 1.07507 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.0588 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04932 | 0.724 |
DC3000/delta hrp 6h | 0.95036 | 0.95 |
DC3000/delta hrp 12h | 1.11225 | 1 |
DC3000/delta hrp 24h | 0.8987 | 0.246 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.79352 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.62065 | 1 |
Exp 36h | 0.79402 | 0.661 |
Exp 60h | 0.75158 | 0.664 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.95021 | 1 |
Var 0h | 0.43066 | 0.457 |
Var 12h I row2-row1 | 0.92683 | 0.77 |
Var 12h NI row2-row1 | 1.01542 | 1 |
Var 36h I row2-row1 | 1.17883 | 1 |
Var 36h NI row2-row1 | 1.11693 | 1 |
Var 60h I row2-row1 | 0.9281 | 0.952 |
Var 60h NI row2-row1 | 1.02221 | 1 |
Time course 0hI-0hNI | 1.04064 | 0.852 |
Time course 12hI-12hNI | 0.85611 | 0.052 |
Time course 36hI-36hNI | 0.64592 | 0.023 |
Time course 60hI-60hNI | 0.51496 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.93726 | 0.391 |
transgenic ySAMdc/azygous control (breaker) | 0.48191 | 0.131 |
transgenic ySAMdc/azygous control (red) | 1.12104 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98346 | 0.431 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.85311 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.51653 | 0.172 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 0.38439 | 0.181 |
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