Expression of 1-1-8.1.12.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.223960.588
27DAP/17DAP1.245810.825
39DAP/27DAP1.18470.893
41DAP/39DAP1.306550.597
42DAP/41DAP1.576070.806
43DAP/42DAP1.081371
47DAP/43DAP0.730940.242
52DAP/47DAP1.240090.545
57DAP/52DAP1.275150.93

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.852470.103
17DAP/reference1.115040.239
27DAP/reference1.078620.529
39DAP/reference1.232890.169
41DAP/reference1.125350.587
42DAP/reference1.137040.182
43DAP/reference1.12080.471
47DAP/reference1.302050.001
52DAP/reference0.965730.461
57DAP/reference1.02621

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.200590.492
27DAP/17DAP0.873480.648
39DAP/27DAP1.368390.147
41DAP/39DAP0.861420.567
42DAP/41DAP1.54780.006
43DAP/42DAP1.827980.015
47DAP/43DAP1.00380.997
52DAP/47DAP1.385720.382
57DAP/52DAP0.973320.705
57DAP/7DAP0.892520.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.889270.246
17DAP/reference0.929230.124
27DAP/reference0.954960.231
39DAP/reference1.033990.819
41DAP/reference0.956330.357
42DAP/reference1.019031
43DAP/reference1.070450.386
47DAP/reference1.264460.055
52DAP/reference1.164180.008
57DAP/reference1.079820.288

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.070060.724
17DAP/reference1.11860.229
27DAP/reference0.88880.139
39DAP/reference1.103050.848
41DAP/reference0.894470.11
42DAP/reference1.027080.969
43DAP/reference1.124240.633
47DAP/reference1.145890.067
52DAP/reference1.061760.882
57DAP/reference1.12930.887

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.818280.054
17DAP/reference1.033220.839
27DAP/reference0.913990.302
39DAP/reference1.002320.889
41DAP/reference1.008391
42DAP/reference1.06390.68
43DAP/reference1.139820.655
47DAP/reference1.253410.013
52DAP/reference1.090720.448
57DAP/reference1.142790.304

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.04971
26DAP/20DAP0.856130.512
34DAP/26DAP1.428390.126
51DAP/34DAP1.032390.909
52DAP/51DAP1.183240.733
53DAP/52DAP1.215310.688
55DAP/53DAP0.963750.864
57DAP/55DAP0.844280.433
62DAP/57DAP1.250320.8
68DAP/62DAP0.937880.769
68DAP/14DAP1.42523

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.529240.02

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.76285
Mature Green Tomato/Ripe Tomato0.813460.06
Immature Eggplant/Mature Eggplant0.855440.223
Ripe Pepper/Ripe Tomato0.728131
Mature Eggplant/Ripe Tomato0.381150.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.864660.708
1-1-2/M820.935841
12-2/M821.049521
12-4/M820.845230.619
1-3/M821.11260.26
2-1-1/M820.778940.784
2-1/M820.759120.325
2-6/M820.896341
3-2/M821.22226
4-1-1/M820.84866
4-1/M821.41407
4-3-2/M820.936571
4-3/M820.665030.374
5-3/M820.786350.419
6-2/M820.66980.497
6-3/M821.112411
7-1/M821.141951
7-2/M820.854430.54
9-3-2/M820.657260.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.473460.277
IL2-6/WTpooled0.563220.348
IL7-5/WTpooled0.719991
IL7-3/WTpooled1.291741
IL12-4/WTpooled1.05450.891
IL1-4/WTpooled0.861890.422
WT/WTpooled1.075071

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.05880.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.049320.724
DC3000/delta hrp 6h0.950360.95
DC3000/delta hrp 12h1.112251
DC3000/delta hrp 24h0.89870.246

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.79352

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.620651
Exp 36h0.794020.661
Exp 60h0.751580.664

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.950211
Var 0h0.430660.457
Var 12h I row2-row10.926830.77
Var 12h NI row2-row11.015421
Var 36h I row2-row11.178831
Var 36h NI row2-row11.116931
Var 60h I row2-row10.92810.952
Var 60h NI row2-row11.022211
Time course 0hI-0hNI1.040640.852
Time course 12hI-12hNI0.856110.052
Time course 36hI-36hNI0.645920.023
Time course 60hI-60hNI0.514960.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.937260.391
transgenic ySAMdc/azygous control (breaker)0.481910.131
transgenic ySAMdc/azygous control (red)1.121041

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.983460.431

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.853110.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.516530.172
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.384390.181