Expression of 1-1-8.1.13.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.07010.863
27DAP/17DAP1.130390.854
39DAP/27DAP1.004810.749
41DAP/39DAP0.999590.866
42DAP/41DAP1.135570.913
43DAP/42DAP1.105480.894
47DAP/43DAP1.000530.904
52DAP/47DAP0.827630.548
57DAP/52DAP1.129920.904

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.937480.344
17DAP/reference1.143190.015
27DAP/reference1.056730.623
39DAP/reference1.043760.403
41DAP/reference1.017120.91
42DAP/reference1.023940.931
43DAP/reference0.970270.631
47DAP/reference1.097780.018
52DAP/reference0.819160.195
57DAP/reference1.046940.853

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.987780.75
27DAP/17DAP0.998881
39DAP/27DAP1.015360.751
41DAP/39DAP1.030310.781
42DAP/41DAP1.006531
43DAP/42DAP1.031440.446
47DAP/43DAP0.985570.911
52DAP/47DAP0.9460.585
57DAP/52DAP1.015520.957
57DAP/7DAP0.953651

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.337940.061
17DAP/reference1.563120.03
27DAP/reference1.70530.006
39DAP/reference1.23660.013
41DAP/reference1.221570.109
42DAP/reference1.161480.308
43DAP/reference1.772710.021
47DAP/reference1.25910.324
52DAP/reference1.323060.021
57DAP/reference1.441940.01

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.999230.97
17DAP/reference0.947710.253
27DAP/reference0.891490.076
39DAP/reference0.87910.093
41DAP/reference0.969440.451
42DAP/reference0.972550.433
43DAP/reference0.934870.344
47DAP/reference1.146830.011
52DAP/reference0.904820.04
57DAP/reference1.027750.508

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.98177
17DAP/reference1.395020.159
27DAP/reference2.69680.023
39DAP/reference2.215250.13
41DAP/reference1.854770.029
42DAP/reference1.349540.648
43DAP/reference1.440670.326
47DAP/reference1.062470.405
52DAP/reference1.509520.136
57DAP/reference0.921530.087

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.029050.966
26DAP/20DAP0.966631
34DAP/26DAP0.990981
51DAP/34DAP1.023750.814
52DAP/51DAP0.992721
53DAP/52DAP1.073060.552
55DAP/53DAP0.999790.939
57DAP/55DAP1.021550.745
62DAP/57DAP0.923290.994
68DAP/62DAP1.133260.646
68DAP/14DAP0.988851

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.035230.391

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.832050.282
Mature Green Tomato/Ripe Tomato0.426230.021
Immature Eggplant/Mature Eggplant1.012070.606
Ripe Pepper/Ripe Tomato0.557450.293
Mature Eggplant/Ripe Tomato0.95031

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.949860.907
1-1-2/M820.905741
12-2/M821.017541
12-4/M821.010931
1-3/M821.013141
2-1-1/M820.969411
2-1/M821.160471
2-6/M821.011780.695
3-2/M820.98125
4-1-1/M821.01261
4-1/M820.916361
4-3-2/M820.80696
4-3/M820.975591
5-3/M821.004071
6-2/M820.986041
6-3/M821.030131
7-1/M820.864960.803
7-2/M820.945160.599
9-3-2/M820.79642

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.581540.277
IL2-6/WTpooled0.815790.473
IL7-5/WTpooled0.717181
IL7-3/WTpooled1.342461
IL12-4/WTpooled1.107890.595
IL1-4/WTpooled1.123721
WT/WTpooled1.020611

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.017111

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.085720.774
DC3000/delta hrp 6h1.082861
DC3000/delta hrp 12h0.998151
DC3000/delta hrp 24h1.108490.113

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.15270.043
DC3000 delta B/DC3000 delta AB1.142010.282

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.963221
Exp 36h1.453720.326
Exp 60h1.495080.227

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.999951
Var 0h0.502851
Var 12h I row2-row11.188790.204
Var 12h NI row2-row11.046251
Var 36h I row2-row11.020941
Var 36h NI row2-row10.951470.706
Var 60h I row2-row11.054081
Var 60h NI row2-row11.042561
Time course 0hI-0hNI1.079210.867
Time course 12hI-12hNI1.02420.818
Time course 36hI-36hNI1.069390.28
Time course 60hI-60hNI1.80560.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.973990.789
transgenic ySAMdc/azygous control (breaker)1.044481
transgenic ySAMdc/azygous control (red)1.005641

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.991820.5

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.743730.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.127410.307
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.965990.728