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Expression of 1-1-8.1.13.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.814160.364
27DAP/17DAP1.028710.92
39DAP/27DAP0.818870.487
41DAP/39DAP1.136270.765
42DAP/41DAP0.689260.774
43DAP/42DAP1.018170.937
47DAP/43DAP1.140690.702
52DAP/47DAP0.884620.639
57DAP/52DAP1.033411

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.050060.685
17DAP/reference1.063890.086
27DAP/reference1.027810.771
39DAP/reference0.981870.651
41DAP/reference1.112810.043
42DAP/reference0.936250.05
43DAP/reference0.929190.302
47DAP/reference0.950950.038
52DAP/reference0.915010.215
57DAP/reference0.949590.199

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.853870.363
27DAP/17DAP0.889920.724
39DAP/27DAP1.538610.623
41DAP/39DAP1.229710.773
42DAP/41DAP0.920520.524
43DAP/42DAP1.106470.585
47DAP/43DAP0.868110.457
52DAP/47DAP0.850390.585
57DAP/52DAP1.101590.984
57DAP/7DAP0.852061

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.384790.033
17DAP/reference1.837550.006
27DAP/reference1.517130.008
39DAP/reference1.94270.005
41DAP/reference1.874190.011
42DAP/reference2.005690.008
43DAP/reference2.351810.006
47DAP/reference1.200270.685
52DAP/reference1.796020.007
57DAP/reference1.707610.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.080190.456
17DAP/reference0.910430.297
27DAP/reference0.909970.123
39DAP/reference0.887140.093
41DAP/reference0.871620.133
42DAP/reference0.831990.039
43DAP/reference1.031540.774
47DAP/reference0.974550.4
52DAP/reference0.994120.666
57DAP/reference1.002060.72

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.440060.072
17DAP/reference1.172120.511
27DAP/reference1.851520.017
39DAP/reference1.861310.01
41DAP/reference1.511360.014
42DAP/reference1.684170.024
43DAP/reference1.513070.111
47DAP/reference0.997290.667
52DAP/reference2.193160.07
57DAP/reference1.170160.971

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.10770.966
26DAP/20DAP0.737180.512
34DAP/26DAP1.203280.542
51DAP/34DAP0.610960.049
52DAP/51DAP1.153550.904
53DAP/52DAP1.044341
55DAP/53DAP1.096460.939
57DAP/55DAP0.988470.909
62DAP/57DAP1.034891
68DAP/62DAP0.842380.152
68DAP/14DAP0.885391

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.437170.7

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper9.48268N/A
Mature Green Tomato/Ripe Tomato1.0844N/A
Immature Eggplant/Mature Eggplant4.095620.05
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato4.241521

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.197820.551
1-1-2/M821.218291
12-2/M821.129131
12-4/M821.105641
1-3/M820.974561
2-1-1/M820.57136N/A
2-1/M82N/AN/A
2-6/M820.835821
3-2/M820.8619N/A
4-1-1/M821.33448N/A
4-1/M821.79907N/A
4-3-2/M82N/AN/A
4-3/M820.873320.397
5-3/M820.925131
6-2/M820.679131
6-3/M821.028221
7-1/M820.985171
7-2/M820.609390.527
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.026710.493
IL2-6/WTpooled1.38180.531
IL7-5/WTpooled1.443750.792
IL7-3/WTpooled0.703910.418
IL12-4/WTpooled1.056370.891
IL1-4/WTpooled1.292711
WT/WTpooled0.979451

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.431050.197

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.132060.921
DC3000/delta hrp 6h1.199261
DC3000/delta hrp 12h1.22371
DC3000/delta hrp 24h0.881290.155

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.075231
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.025671
Var 0h0.496891
Var 12h I row2-row11.495920.58
Var 12h NI row2-row11.161731
Var 36h I row2-row11.081321
Var 36h NI row2-row11.717161
Var 60h I row2-row11.14969N/A
Var 60h NI row2-row11.021761
Time course 0hI-0hNI0.94030.567
Time course 12hI-12hNI0.859210.05
Time course 36hI-36hNI0.704430.023
Time course 60hI-60hNI0.396410.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.287140.541
transgenic ySAMdc/azygous control (breaker)1.013341
transgenic ySAMdc/azygous control (red)1.455340.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.95120.122

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.92490.59

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.248940.083
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.860230.424