Expression of 1-1-8.1.13.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.857490.511
27DAP/17DAP1.164330.93
39DAP/27DAP1.408980.122
41DAP/39DAP0.876770.524
42DAP/41DAP1.22160.751
43DAP/42DAP1.006810.945
47DAP/43DAP0.903470.671
52DAP/47DAP1.278960.491
57DAP/52DAP1.040190.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.005521
17DAP/reference0.952990.536
27DAP/reference1.008361
39DAP/reference0.951740.575
41DAP/reference1.036560.48
42DAP/reference0.948280.056
43DAP/reference0.978420.576
47DAP/reference1.000020.764
52DAP/reference0.899380.093
57DAP/reference0.994710.701

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.06520.508
27DAP/17DAP0.972170.878
39DAP/27DAP0.974770.759
41DAP/39DAP1.062370.382
42DAP/41DAP0.970050.721
43DAP/42DAP0.978420.576
47DAP/43DAP1.006090.957
52DAP/47DAP0.995660.962
57DAP/52DAP1.000261
57DAP/7DAP1.081031

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.889150.05
17DAP/reference0.896630.019
27DAP/reference0.878470.011
39DAP/reference0.976740.411
41DAP/reference1.028510.507
42DAP/reference1.041920.174
43DAP/reference0.930420.011
47DAP/reference0.93270.057
52DAP/reference0.920570.106
57DAP/reference0.957220.302

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.980910.736
17DAP/reference1.076270.518
27DAP/reference1.034030.86
39DAP/reference0.922750.136
41DAP/reference0.926310.156
42DAP/reference0.939550.169
43DAP/reference1.028860.617
47DAP/reference0.992120.643
52DAP/reference0.923150.072
57DAP/reference1.046210.306

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.899850.041
17DAP/reference0.953680.374
27DAP/reference1.004491
39DAP/reference0.936270.009
41DAP/reference0.930920.055
42DAP/reference0.869770.014
43DAP/reference0.889790.023
47DAP/reference0.983920.558
52DAP/reference0.866770.184
57DAP/reference0.825370.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.055970.966
26DAP/20DAP1.048150.931
34DAP/26DAP0.944870.381
51DAP/34DAP1.039580.898
52DAP/51DAP1.038450.689
53DAP/52DAP0.927080.703
55DAP/53DAP0.950760.735
57DAP/55DAP0.92440.619
62DAP/57DAP1.033260.902
68DAP/62DAP1.026521
68DAP/14DAP1.090270.615

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.079360.198

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.058560.666
Mature Green Tomato/Ripe Tomato1.107250.948
Immature Eggplant/Mature Eggplant1.214450.136
Ripe Pepper/Ripe Tomato1.01361
Mature Eggplant/Ripe Tomato1.065550.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.024430.742
1-1-2/M820.96951
12-2/M821.004771
12-4/M821.011481
1-3/M821.101880.479
2-1-1/M821.003661
2-1/M821.210661
2-6/M820.956711
3-2/M821.009831
4-1-1/M821.106970.968
4-1/M820.880021
4-3-2/M821.123681
4-3/M820.840350.72
5-3/M820.991
6-2/M820.996391
6-3/M821.027981
7-1/M82N/AN/A
7-2/M821.013131
9-3-2/M820.94499

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.12280.365
IL2-6/WTpooled1.630230.531
IL7-5/WTpooled0.64521
IL7-3/WTpooled1.151661
IL12-4/WTpooled1.179870.367
IL1-4/WTpooled1.125210.426
WT/WTpooled1.136391

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.103211

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.051130.823
DC3000/delta hrp 6h1.040051
DC3000/delta hrp 12h1.006481
DC3000/delta hrp 24h0.981790.91

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.240610.046
DC3000 delta B/DC3000 delta AB1.097630.349

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.76531
Exp 36h1.308030.693
Exp 60h1.33550.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.011321
Var 0h0.506971
Var 12h I row2-row11.246410.254
Var 12h NI row2-row10.979680.906
Var 36h I row2-row10.90730.805
Var 36h NI row2-row10.921910.706
Var 60h I row2-row10.976140.439
Var 60h NI row2-row10.994611
Time course 0hI-0hNI1.028870.867
Time course 12hI-12hNI1.000181
Time course 36hI-36hNI1.14410.08
Time course 60hI-60hNI2.14160.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.033160.571
transgenic ySAMdc/azygous control (breaker)1.354960.248
transgenic ySAMdc/azygous control (red)1.101620.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.995270.737

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.822230.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.043030.14
Manapal/WT (break)0.962241
Manapal/WT (red)1.54950.137