Expression of 1-1-8.1.14.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.68856 | 0.069 |
27DAP/17DAP | 1.17178 | 0.859 |
39DAP/27DAP | 1.30415 | 0.387 |
41DAP/39DAP | 0.85666 | 0.455 |
42DAP/41DAP | 0.85525 | 0.774 |
43DAP/42DAP | 0.79202 | 0.454 |
47DAP/43DAP | 0.8505 | 0.526 |
52DAP/47DAP | 2.58644 | 0.277 |
57DAP/52DAP | 1.03018 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81182 | 0.035 |
17DAP/reference | 0.85094 | 0.026 |
27DAP/reference | 0.83882 | 0.152 |
39DAP/reference | 0.84668 | 0.149 |
41DAP/reference | 0.66489 | 0.008 |
42DAP/reference | 0.78598 | 0.001 |
43DAP/reference | 0.89272 | 0.029 |
47DAP/reference | 0.89832 | 0.09 |
52DAP/reference | 1.08535 | 0.912 |
57DAP/reference | 1.24508 | 0.01 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92498 | 0.509 |
27DAP/17DAP | 1.05023 | 0.951 |
39DAP/27DAP | 0.71501 | 0.066 |
41DAP/39DAP | 0.87988 | 0.586 |
42DAP/41DAP | 1.13917 | 0.526 |
43DAP/42DAP | 0.9809 | 0.831 |
47DAP/43DAP | 0.94493 | 0.701 |
52DAP/47DAP | 0.81811 | 0.405 |
57DAP/52DAP | 0.98594 | 0.756 |
57DAP/7DAP | 0.80459 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9546 | 0.402 |
17DAP/reference | 0.86033 | 0.039 |
27DAP/reference | 0.91049 | 0.055 |
39DAP/reference | 0.84222 | 0.049 |
41DAP/reference | 0.7017 | 0.02 |
42DAP/reference | 0.76524 | 0.033 |
43DAP/reference | 0.7263 | 0.014 |
47DAP/reference | 0.95895 | 0.504 |
52DAP/reference | 0.78661 | 0.015 |
57DAP/reference | 0.81729 | 0.023 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87728 | 0.176 |
17DAP/reference | 0.64474 | 0.042 |
27DAP/reference | 0.82982 | 0.031 |
39DAP/reference | 0.78637 | 0.095 |
41DAP/reference | 0.93119 | 0.25 |
42DAP/reference | 0.79328 | 0.237 |
43DAP/reference | 0.76186 | 0.077 |
47DAP/reference | 0.82344 | 0.021 |
52DAP/reference | 0.84026 | 0.04 |
57DAP/reference | 0.60378 | 0.008 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.79474 | 0.071 |
17DAP/reference | 0.93697 | 0.389 |
27DAP/reference | 0.97504 | 0.539 |
39DAP/reference | 0.81702 | 0.016 |
41DAP/reference | 0.83431 | 0.237 |
42DAP/reference | 1.01606 | 0.994 |
43DAP/reference | 0.85998 | 0.061 |
47DAP/reference | 0.80366 | 0.023 |
52DAP/reference | 0.78888 | 0.141 |
57DAP/reference | 1.06737 | 0.971 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0596 | 0.966 |
26DAP/20DAP | 1.10328 | 0.818 |
34DAP/26DAP | 0.97367 | 0.97 |
51DAP/34DAP | 1.0273 | 0.869 |
52DAP/51DAP | 0.92796 | 1 |
53DAP/52DAP | 0.77976 | 0.21 |
55DAP/53DAP | 0.43598 | 0.144 |
57DAP/55DAP | 0.95041 | 0.783 |
62DAP/57DAP | 1.204 | 0.622 |
68DAP/62DAP | 1.5352 | 0.047 |
68DAP/14DAP | 1.44636 | 0.295 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.51511 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.29461 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.55203 | 0.028 |
Immature Eggplant/Mature Eggplant | 0.74182 | 0.089 |
Ripe Pepper/Ripe Tomato | 0.93473 | 1 |
Mature Eggplant/Ripe Tomato | 2.24247 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.14812 | 0.877 |
1-1-2/M82 | 1.04259 | 1 |
12-2/M82 | 1.41385 | 1 |
12-4/M82 | 0.93432 | 1 |
1-3/M82 | 0.95259 | 1 |
2-1-1/M82 | 0.50442 | 0.683 |
2-1/M82 | 1.0156 | 1 |
2-6/M82 | 1.08669 | 1 |
3-2/M82 | 0.89379 | |
4-1-1/M82 | 0.67952 | 0.908 |
4-1/M82 | 0.86839 | 0.737 |
4-3-2/M82 | 0.9676 | |
4-3/M82 | 0.62144 | 0.578 |
5-3/M82 | 0.85917 | 0.642 |
6-2/M82 | 1.00637 | 1 |
6-3/M82 | 1.2623 | 1 |
7-1/M82 | 1.11034 | |
7-2/M82 | 0.94717 | 1 |
9-3-2/M82 | 0.95065 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.03504 | 0.493 |
IL2-6/WTpooled | 0.89881 | 1 |
IL7-5/WTpooled | 1.08736 | 0.792 |
IL7-3/WTpooled | 1.28325 | 1 |
IL12-4/WTpooled | 1.00681 | 1 |
IL1-4/WTpooled | 1.0491 | 1 |
WT/WTpooled | 1.00596 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.13163 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.14937 | 0.692 |
DC3000/delta hrp 6h | 1.13252 | 1 |
DC3000/delta hrp 12h | 0.90621 | 1 |
DC3000/delta hrp 24h | 0.90882 | 0.323 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.03922 | 0.648 |
DC3000 delta B/DC3000 delta AB | 0.7151 | 0.032 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.93147 | 1 |
Exp 36h | 1.00525 | 1 |
Exp 60h | 0.87788 | 0.522 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04194 | 1 |
Var 0h | 0.77991 | 0.933 |
Var 12h I row2-row1 | 1.05299 | 0.613 |
Var 12h NI row2-row1 | 1.21608 | 0.649 |
Var 36h I row2-row1 | 0.95715 | 0.285 |
Var 36h NI row2-row1 | 1.13714 | 1 |
Var 60h I row2-row1 | 0.86573 | 0.439 |
Var 60h NI row2-row1 | 1.03772 | 1 |
Time course 0hI-0hNI | 1.04711 | 0.852 |
Time course 12hI-12hNI | 0.96996 | 0.738 |
Time course 36hI-36hNI | 0.95077 | 0.246 |
Time course 60hI-60hNI | 0.79711 | 0.161 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.93206 | 0.377 |
transgenic ySAMdc/azygous control (breaker) | 0.77089 | 0.173 |
transgenic ySAMdc/azygous control (red) | 1.22529 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.88582 | 0.126 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.59156 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.02759 | 1 |
Manapal/WT (break) | 1.77336 | 0.381 |
Manapal/WT (red) | 1.24761 | 0.413 |
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