Expression of 1-1-8.1.14.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.73455 | 0.107 |
27DAP/17DAP | 0.96458 | 0.819 |
39DAP/27DAP | 1.57355 | 0.095 |
41DAP/39DAP | 0.56316 | 0.047 |
42DAP/41DAP | 0.81805 | 1 |
43DAP/42DAP | 1.02467 | 0.937 |
47DAP/43DAP | 0.37253 | 0.049 |
52DAP/47DAP | 1.38657 | 0.374 |
57DAP/52DAP | 1.41682 | 0.883 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.54551 | 0.036 |
17DAP/reference | 0.76588 | 0.12 |
27DAP/reference | 0.66669 | 0.048 |
39DAP/reference | 0.60778 | 0.031 |
41DAP/reference | 0.58452 | 0.009 |
42DAP/reference | 1.09471 | 0.137 |
43DAP/reference | 0.76522 | 0.063 |
47DAP/reference | 0.80949 | 0.011 |
52DAP/reference | 0.62079 | 0.043 |
57DAP/reference | 0.89535 | 0.054 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.8635 | 0.085 |
27DAP/17DAP | 1.00083 | 1 |
39DAP/27DAP | 0.79139 | 0.035 |
41DAP/39DAP | 1.19031 | 1 |
42DAP/41DAP | 1.03546 | 0.894 |
43DAP/42DAP | 0.90243 | 0.189 |
47DAP/43DAP | 0.90081 | 0.297 |
52DAP/47DAP | 0.58524 | 0.058 |
57DAP/52DAP | 0.90615 | 0.558 |
57DAP/7DAP | 0.4769 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.90485 | 0.024 |
17DAP/reference | 2.33996 | 0.007 |
27DAP/reference | 1.56166 | 0.007 |
39DAP/reference | 1.30735 | 0.024 |
41DAP/reference | 1.71561 | 0.011 |
42DAP/reference | 1.46297 | 0.132 |
43DAP/reference | 1.35667 | 0.02 |
47DAP/reference | 1.24836 | 0.084 |
52DAP/reference | 1.38947 | 0.048 |
57DAP/reference | 1.09143 | 0.799 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15393 | 0.569 |
17DAP/reference | 1.45618 | 0.007 |
27DAP/reference | 1.46306 | 0.048 |
39DAP/reference | 0.84888 | 0.097 |
41DAP/reference | 1.12195 | 0.248 |
42DAP/reference | 1.41096 | 0.051 |
43DAP/reference | 0.7859 | 0.098 |
47DAP/reference | 1.06084 | 0.556 |
52DAP/reference | 0.54945 | 0.004 |
57DAP/reference | 0.57753 | 0.011 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.51644 | 0.017 |
17DAP/reference | 1.60904 | 0.074 |
27DAP/reference | 1.44338 | 0.065 |
39DAP/reference | 1.51205 | 0.014 |
41DAP/reference | 1.12597 | 0.072 |
42DAP/reference | 1.2256 | 0.158 |
43DAP/reference | 1.37496 | 0.037 |
47DAP/reference | 0.53252 | 0.006 |
52DAP/reference | 0.85096 | 0.166 |
57DAP/reference | 1.26618 | 0.311 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.22474 | 0.966 |
26DAP/20DAP | 3.57088 | 0.097 |
34DAP/26DAP | 0.72515 | 0.237 |
51DAP/34DAP | 0.84895 | 0.252 |
52DAP/51DAP | 1.14908 | 0.281 |
53DAP/52DAP | 0.76684 | 0.212 |
55DAP/53DAP | 0.84368 | 0.577 |
57DAP/55DAP | 1.21007 | 0.407 |
62DAP/57DAP | 0.89012 | 0.871 |
68DAP/62DAP | 1.59522 | 0.259 |
68DAP/14DAP | 1.30943 | 0.153 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 4.73488 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.83913 | 0.301 |
Mature Green Tomato/Ripe Tomato | 1.87665 | 0.095 |
Immature Eggplant/Mature Eggplant | 0.94548 | 0.594 |
Ripe Pepper/Ripe Tomato | 0.99118 | 1 |
Mature Eggplant/Ripe Tomato | 1.47781 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.96254 | 0.934 |
1-1-2/M82 | 1.25265 | 1 |
12-2/M82 | 0.79599 | 0.955 |
12-4/M82 | 1.0635 | 1 |
1-3/M82 | 1.92769 | 0.277 |
2-1-1/M82 | 0.8943 | 1 |
2-1/M82 | 1.23628 | 1 |
2-6/M82 | 1.31175 | 0.594 |
3-2/M82 | 1.02467 | |
4-1-1/M82 | 1.67734 | 1 |
4-1/M82 | 1.4683 | 1 |
4-3-2/M82 | 1.75289 | |
4-3/M82 | 1.42269 | 1 |
5-3/M82 | 1.26182 | 0.496 |
6-2/M82 | 2.70157 | 0.219 |
6-3/M82 | 1.13772 | 1 |
7-1/M82 | 0.96209 | 1 |
7-2/M82 | 1.68 | 0.282 |
9-3-2/M82 | 1.4737 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.83 | 0.243 |
IL2-6/WTpooled | 0.71015 | 0.473 |
IL7-5/WTpooled | 0.7695 | 1 |
IL7-3/WTpooled | 1.60273 | 0.362 |
IL12-4/WTpooled | 1.10322 | 0.673 |
IL1-4/WTpooled | 0.86937 | 0.834 |
WT/WTpooled | 1.02387 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.25251 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98246 | 1 |
DC3000/delta hrp 6h | 0.97935 | 0.95 |
DC3000/delta hrp 12h | 1.14234 | 1 |
DC3000/delta hrp 24h | 1.08056 | 0.633 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.61375 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.6713 | 0.079 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.24018 | 1 |
Exp 36h | 1.36276 | 0.693 |
Exp 60h | 1.84776 | 0.237 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0162 | 1 |
Var 0h | 0.79428 | 0.782 |
Var 12h I row2-row1 | 0.9393 | 0.705 |
Var 12h NI row2-row1 | 1.18685 | 0.235 |
Var 36h I row2-row1 | 1.27329 | 0.368 |
Var 36h NI row2-row1 | 0.87159 | 0.469 |
Var 60h I row2-row1 | 0.72287 | 0.374 |
Var 60h NI row2-row1 | 0.79997 | 0.69 |
Time course 0hI-0hNI | 1.09952 | 0.63 |
Time course 12hI-12hNI | 1.08117 | 0.452 |
Time course 36hI-36hNI | 1.4574 | 0.006 |
Time course 60hI-60hNI | 4.33033 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.077 | 0.654 |
transgenic ySAMdc/azygous control (breaker) | 1.00683 | 1 |
transgenic ySAMdc/azygous control (red) | 1.1519 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.25793 | 0.35 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.57469 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.07073 | 0.14 |
Manapal/WT (break) | 1.10731 | 0.381 |
Manapal/WT (red) | 0.96417 | 0.503 |
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