Expression of 1-1-8.1.14.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.734550.107
27DAP/17DAP0.964580.819
39DAP/27DAP1.573550.095
41DAP/39DAP0.563160.047
42DAP/41DAP0.818051
43DAP/42DAP1.024670.937
47DAP/43DAP0.372530.049
52DAP/47DAP1.386570.374
57DAP/52DAP1.416820.883

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.545510.036
17DAP/reference0.765880.12
27DAP/reference0.666690.048
39DAP/reference0.607780.031
41DAP/reference0.584520.009
42DAP/reference1.094710.137
43DAP/reference0.765220.063
47DAP/reference0.809490.011
52DAP/reference0.620790.043
57DAP/reference0.895350.054

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.86350.085
27DAP/17DAP1.000831
39DAP/27DAP0.791390.035
41DAP/39DAP1.190311
42DAP/41DAP1.035460.894
43DAP/42DAP0.902430.189
47DAP/43DAP0.900810.297
52DAP/47DAP0.585240.058
57DAP/52DAP0.906150.558
57DAP/7DAP0.47691

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.904850.024
17DAP/reference2.339960.007
27DAP/reference1.561660.007
39DAP/reference1.307350.024
41DAP/reference1.715610.011
42DAP/reference1.462970.132
43DAP/reference1.356670.02
47DAP/reference1.248360.084
52DAP/reference1.389470.048
57DAP/reference1.091430.799

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.153930.569
17DAP/reference1.456180.007
27DAP/reference1.463060.048
39DAP/reference0.848880.097
41DAP/reference1.121950.248
42DAP/reference1.410960.051
43DAP/reference0.78590.098
47DAP/reference1.060840.556
52DAP/reference0.549450.004
57DAP/reference0.577530.011

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.516440.017
17DAP/reference1.609040.074
27DAP/reference1.443380.065
39DAP/reference1.512050.014
41DAP/reference1.125970.072
42DAP/reference1.22560.158
43DAP/reference1.374960.037
47DAP/reference0.532520.006
52DAP/reference0.850960.166
57DAP/reference1.266180.311

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.224740.966
26DAP/20DAP3.570880.097
34DAP/26DAP0.725150.237
51DAP/34DAP0.848950.252
52DAP/51DAP1.149080.281
53DAP/52DAP0.766840.212
55DAP/53DAP0.843680.577
57DAP/55DAP1.210070.407
62DAP/57DAP0.890120.871
68DAP/62DAP1.595220.259
68DAP/14DAP1.309430.153

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker4.734880.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.839130.301
Mature Green Tomato/Ripe Tomato1.876650.095
Immature Eggplant/Mature Eggplant0.945480.594
Ripe Pepper/Ripe Tomato0.991181
Mature Eggplant/Ripe Tomato1.477810.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.962540.934
1-1-2/M821.252651
12-2/M820.795990.955
12-4/M821.06351
1-3/M821.927690.277
2-1-1/M820.89431
2-1/M821.236281
2-6/M821.311750.594
3-2/M821.02467
4-1-1/M821.677341
4-1/M821.46831
4-3-2/M821.75289
4-3/M821.422691
5-3/M821.261820.496
6-2/M822.701570.219
6-3/M821.137721
7-1/M820.962091
7-2/M821.680.282
9-3-2/M821.47371

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.830.243
IL2-6/WTpooled0.710150.473
IL7-5/WTpooled0.76951
IL7-3/WTpooled1.602730.362
IL12-4/WTpooled1.103220.673
IL1-4/WTpooled0.869370.834
WT/WTpooled1.023871

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.252511

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.982461
DC3000/delta hrp 6h0.979350.95
DC3000/delta hrp 12h1.142341
DC3000/delta hrp 24h1.080560.633

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.613750.042
DC3000 delta B/DC3000 delta AB1.67130.079

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.240181
Exp 36h1.362760.693
Exp 60h1.847760.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.01621
Var 0h0.794280.782
Var 12h I row2-row10.93930.705
Var 12h NI row2-row11.186850.235
Var 36h I row2-row11.273290.368
Var 36h NI row2-row10.871590.469
Var 60h I row2-row10.722870.374
Var 60h NI row2-row10.799970.69
Time course 0hI-0hNI1.099520.63
Time course 12hI-12hNI1.081170.452
Time course 36hI-36hNI1.45740.006
Time course 60hI-60hNI4.330330.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.0770.654
transgenic ySAMdc/azygous control (breaker)1.006831
transgenic ySAMdc/azygous control (red)1.15190.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.257930.35

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.574690.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.070730.14
Manapal/WT (break)1.107310.381
Manapal/WT (red)0.964170.503