Expression of 1-1-8.1.14.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98834 | 0.83 |
27DAP/17DAP | 1.36355 | 0.742 |
39DAP/27DAP | 0.86813 | 0.449 |
41DAP/39DAP | 1.11089 | 0.584 |
42DAP/41DAP | 1.03904 | 1 |
43DAP/42DAP | 0.83866 | 0.708 |
47DAP/43DAP | 1.04431 | 0.926 |
52DAP/47DAP | 1.19156 | 0.964 |
57DAP/52DAP | 0.80636 | 0.646 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01253 | 0.844 |
17DAP/reference | 0.91695 | 0.298 |
27DAP/reference | 0.94495 | 0.444 |
39DAP/reference | 1.10785 | 0.256 |
41DAP/reference | 0.94436 | 0.201 |
42DAP/reference | 1.03165 | 0.869 |
43DAP/reference | 0.90308 | 0.287 |
47DAP/reference | 1.0179 | 1 |
52DAP/reference | 0.95415 | 0.416 |
57DAP/reference | 1.12966 | 0.186 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00932 | 0.871 |
27DAP/17DAP | 0.9461 | 0.878 |
39DAP/27DAP | 1.06518 | 0.698 |
41DAP/39DAP | 0.97018 | 0.968 |
42DAP/41DAP | 1.02304 | 1 |
43DAP/42DAP | 1.12386 | 0.478 |
47DAP/43DAP | 1.03382 | 0.857 |
52DAP/47DAP | 1.03361 | 0.927 |
57DAP/52DAP | 1.0021 | 0.875 |
57DAP/7DAP | 1.26124 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94388 | 0.326 |
17DAP/reference | 1.06148 | 0.477 |
27DAP/reference | 1.24279 | 0.088 |
39DAP/reference | 0.84591 | 0.025 |
41DAP/reference | 0.93023 | 0.259 |
42DAP/reference | 0.95158 | 0.262 |
43DAP/reference | 0.79367 | 0.016 |
47DAP/reference | 0.79798 | 0.128 |
52DAP/reference | 0.83721 | 0.077 |
57DAP/reference | 0.81279 | 0.016 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97358 | 0.706 |
17DAP/reference | 1.36412 | 0.008 |
27DAP/reference | 1.07509 | 0.822 |
39DAP/reference | 1.03877 | 0.602 |
41DAP/reference | 1.04751 | 0.944 |
42DAP/reference | 1.42262 | 0.027 |
43DAP/reference | 1.24489 | 0.099 |
47DAP/reference | 1.44199 | 0.008 |
52DAP/reference | 0.90289 | 0.239 |
57DAP/reference | 0.89172 | 0.243 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97806 | 0.526 |
17DAP/reference | 1.06768 | 0.585 |
27DAP/reference | 1.13228 | 0.061 |
39DAP/reference | 1.00673 | 1 |
41DAP/reference | 1.19083 | 0.213 |
42DAP/reference | 1.14349 | 0.138 |
43DAP/reference | 0.94496 | 0.398 |
47DAP/reference | 0.77345 | 0.043 |
52DAP/reference | 0.93924 | 0.472 |
57DAP/reference | 1.00989 | 1 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.89459 | 1 |
26DAP/20DAP | 0.84212 | 0.228 |
34DAP/26DAP | 1.00426 | 0.98 |
51DAP/34DAP | 0.88616 | 0.498 |
52DAP/51DAP | 1.05642 | 0.954 |
53DAP/52DAP | 0.97897 | 0.917 |
55DAP/53DAP | 1.28136 | 0.081 |
57DAP/55DAP | 1.00446 | 0.955 |
62DAP/57DAP | 0.98364 | 0.994 |
68DAP/62DAP | 1.12288 | 0.866 |
68DAP/14DAP | 1.10416 | 0.578 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.07068 | 0.591 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.92876 | 0.551 |
Mature Green Tomato/Ripe Tomato | 1.03166 | 0.898 |
Immature Eggplant/Mature Eggplant | 0.84737 | 0.1 |
Ripe Pepper/Ripe Tomato | 1.41482 | 1 |
Mature Eggplant/Ripe Tomato | 1.38832 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.18964 | 0.574 |
1-1-2/M82 | 1.33987 | 1 |
12-2/M82 | 1.08866 | 0.61 |
12-4/M82 | 1.04115 | 1 |
1-3/M82 | 0.80413 | 0.501 |
2-1-1/M82 | 1.01921 | 1 |
2-1/M82 | 0.88053 | 0.74 |
2-6/M82 | 1.13055 | 0.395 |
3-2/M82 | 1.01701 | |
4-1-1/M82 | 0.91355 | 1 |
4-1/M82 | 1.23489 | |
4-3-2/M82 | 1.2163 | 0.284 |
4-3/M82 | 1.16831 | 1 |
5-3/M82 | 0.86465 | 0.49 |
6-2/M82 | 0.94096 | 1 |
6-3/M82 | 0.93137 | 1 |
7-1/M82 | 0.73939 | |
7-2/M82 | 0.87664 | 0.565 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.69986 | 0.277 |
IL2-6/WTpooled | 0.61585 | 0.473 |
IL7-5/WTpooled | 1.13191 | |
IL7-3/WTpooled | 1.63542 | 1 |
IL12-4/WTpooled | 1.06389 | 0.891 |
IL1-4/WTpooled | 1.20362 | 1 |
WT/WTpooled | 0.91954 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.78423 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02241 | |
DC3000/delta hrp 6h | 1.08151 | 1 |
DC3000/delta hrp 12h | 1.0321 | 1 |
DC3000/delta hrp 24h | 0.94892 | 0.662 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.08042 | |
DC3000 delta B/DC3000 delta AB | 0.77239 | 0.167 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.15775 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0133 | 1 |
Var 0h | 0.95777 | 1 |
Var 12h I row2-row1 | 0.77027 | 0.418 |
Var 12h NI row2-row1 | 1.06538 | 1 |
Var 36h I row2-row1 | 0.87702 | 0.805 |
Var 36h NI row2-row1 | 1.42039 | 1 |
Var 60h I row2-row1 | 1.10174 | 0.562 |
Var 60h NI row2-row1 | 1.04535 | 1 |
Time course 0hI-0hNI | 1.11978 | 0.486 |
Time course 12hI-12hNI | 1.00707 | 1 |
Time course 36hI-36hNI | 0.90505 | 0.225 |
Time course 60hI-60hNI | 0.29306 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.14979 | 0.339 |
transgenic ySAMdc/azygous control (breaker) | 1.21059 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.08971 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01038 | 0.854 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.36073 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.60106 | 0.088 |
Manapal/WT (break) | 1.20207 | 1 |
Manapal/WT (red) | 1.31533 | 0.15 |
|
|