Expression of 1-1-8.1.14.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.988340.83
27DAP/17DAP1.363550.742
39DAP/27DAP0.868130.449
41DAP/39DAP1.110890.584
42DAP/41DAP1.039041
43DAP/42DAP0.838660.708
47DAP/43DAP1.044310.926
52DAP/47DAP1.191560.964
57DAP/52DAP0.806360.646

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.012530.844
17DAP/reference0.916950.298
27DAP/reference0.944950.444
39DAP/reference1.107850.256
41DAP/reference0.944360.201
42DAP/reference1.031650.869
43DAP/reference0.903080.287
47DAP/reference1.01791
52DAP/reference0.954150.416
57DAP/reference1.129660.186

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.009320.871
27DAP/17DAP0.94610.878
39DAP/27DAP1.065180.698
41DAP/39DAP0.970180.968
42DAP/41DAP1.023041
43DAP/42DAP1.123860.478
47DAP/43DAP1.033820.857
52DAP/47DAP1.033610.927
57DAP/52DAP1.00210.875
57DAP/7DAP1.261240.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.943880.326
17DAP/reference1.061480.477
27DAP/reference1.242790.088
39DAP/reference0.845910.025
41DAP/reference0.930230.259
42DAP/reference0.951580.262
43DAP/reference0.793670.016
47DAP/reference0.797980.128
52DAP/reference0.837210.077
57DAP/reference0.812790.016

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.973580.706
17DAP/reference1.364120.008
27DAP/reference1.075090.822
39DAP/reference1.038770.602
41DAP/reference1.047510.944
42DAP/reference1.422620.027
43DAP/reference1.244890.099
47DAP/reference1.441990.008
52DAP/reference0.902890.239
57DAP/reference0.891720.243

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.978060.526
17DAP/reference1.067680.585
27DAP/reference1.132280.061
39DAP/reference1.006731
41DAP/reference1.190830.213
42DAP/reference1.143490.138
43DAP/reference0.944960.398
47DAP/reference0.773450.043
52DAP/reference0.939240.472
57DAP/reference1.009891

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.894591
26DAP/20DAP0.842120.228
34DAP/26DAP1.004260.98
51DAP/34DAP0.886160.498
52DAP/51DAP1.056420.954
53DAP/52DAP0.978970.917
55DAP/53DAP1.281360.081
57DAP/55DAP1.004460.955
62DAP/57DAP0.983640.994
68DAP/62DAP1.122880.866
68DAP/14DAP1.104160.578

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.070680.591

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.928760.551
Mature Green Tomato/Ripe Tomato1.031660.898
Immature Eggplant/Mature Eggplant0.847370.1
Ripe Pepper/Ripe Tomato1.414821
Mature Eggplant/Ripe Tomato1.388321

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.189640.574
1-1-2/M821.339871
12-2/M821.088660.61
12-4/M821.041151
1-3/M820.804130.501
2-1-1/M821.019211
2-1/M820.880530.74
2-6/M821.130550.395
3-2/M821.01701
4-1-1/M820.913551
4-1/M821.23489
4-3-2/M821.21630.284
4-3/M821.168311
5-3/M820.864650.49
6-2/M820.940961
6-3/M820.931371
7-1/M820.73939
7-2/M820.876640.565
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.699860.277
IL2-6/WTpooled0.615850.473
IL7-5/WTpooled1.13191
IL7-3/WTpooled1.635421
IL12-4/WTpooled1.063890.891
IL1-4/WTpooled1.203621
WT/WTpooled0.919541

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.784230.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.02241
DC3000/delta hrp 6h1.081511
DC3000/delta hrp 12h1.03211
DC3000/delta hrp 24h0.948920.662

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.08042
DC3000 delta B/DC3000 delta AB0.772390.167

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.157751
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.01331
Var 0h0.957771
Var 12h I row2-row10.770270.418
Var 12h NI row2-row11.065381
Var 36h I row2-row10.877020.805
Var 36h NI row2-row11.420391
Var 60h I row2-row11.101740.562
Var 60h NI row2-row11.045351
Time course 0hI-0hNI1.119780.486
Time course 12hI-12hNI1.007071
Time course 36hI-36hNI0.905050.225
Time course 60hI-60hNI0.293060.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.149790.339
transgenic ySAMdc/azygous control (breaker)1.210590.248
transgenic ySAMdc/azygous control (red)1.089710.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.010380.854

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.360730.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.601060.088
Manapal/WT (break)1.202071
Manapal/WT (red)1.315330.15