Expression of 1-1-8.1.14.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.81257 | 0.436 |
27DAP/17DAP | 0.70145 | 0.471 |
39DAP/27DAP | 0.70579 | 0.41 |
41DAP/39DAP | 1.08892 | 0.771 |
42DAP/41DAP | 0.92161 | 1 |
43DAP/42DAP | 1.5711 | 0.962 |
47DAP/43DAP | 1.22838 | 0.715 |
52DAP/47DAP | 1.09015 | 0.964 |
57DAP/52DAP | 1.3003 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86105 | 0.115 |
17DAP/reference | 0.90863 | 0.158 |
27DAP/reference | 0.96091 | 0.444 |
39DAP/reference | 0.90981 | 0.072 |
41DAP/reference | 0.91721 | 0.267 |
42DAP/reference | 0.80314 | 0.004 |
43DAP/reference | 0.95611 | 0.302 |
47DAP/reference | 0.90488 | 0.083 |
52DAP/reference | 0.89008 | 0.25 |
57DAP/reference | 0.99855 | 0.736 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97498 | 0.644 |
27DAP/17DAP | 0.95976 | 0.748 |
39DAP/27DAP | 1.04733 | 0.623 |
41DAP/39DAP | 1.15535 | 0.371 |
42DAP/41DAP | 0.95814 | 0.659 |
43DAP/42DAP | 0.98916 | 0.875 |
47DAP/43DAP | 1.09248 | 0.147 |
52DAP/47DAP | 1.00606 | 0.986 |
57DAP/52DAP | 1.01025 | 1 |
57DAP/7DAP | 1.08377 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07911 | 0.555 |
17DAP/reference | N/A | N/A |
27DAP/reference | 1.23579 | 0.02 |
39DAP/reference | 1.02512 | 0.865 |
41DAP/reference | 1.04757 | 0.812 |
42DAP/reference | 0.96958 | 0.014 |
43DAP/reference | 1.12217 | 0.188 |
47DAP/reference | 1.00275 | 1 |
52DAP/reference | 1.1458 | 0.183 |
57DAP/reference | 1.14132 | 0.438 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87251 | 0.197 |
17DAP/reference | 0.6868 | 0.014 |
27DAP/reference | 0.85719 | 0.129 |
39DAP/reference | 0.83052 | 0.02 |
41DAP/reference | 0.98041 | 0.481 |
42DAP/reference | 1.01324 | 0.723 |
43DAP/reference | 0.63611 | 0.033 |
47DAP/reference | 0.89394 | 0.159 |
52DAP/reference | 0.81399 | 0.004 |
57DAP/reference | 0.72261 | 0.032 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06773 | 0.518 |
17DAP/reference | 1.03124 | 0.988 |
27DAP/reference | 2.14655 | 0.032 |
39DAP/reference | 1.17587 | 0.189 |
41DAP/reference | 1.16938 | 0.588 |
42DAP/reference | 1.32225 | 0.031 |
43DAP/reference | 0.83271 | 0.143 |
47DAP/reference | 0.93848 | 0.325 |
52DAP/reference | 1.19302 | 0.566 |
57DAP/reference | 1.25956 | 0.027 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.02785 | 0.966 |
26DAP/20DAP | 1.06088 | 0.916 |
34DAP/26DAP | 1.01836 | 1 |
51DAP/34DAP | 0.98979 | 0.901 |
52DAP/51DAP | 0.9841 | 1 |
53DAP/52DAP | 0.98804 | 0.876 |
55DAP/53DAP | 0.9095 | 0.489 |
57DAP/55DAP | 1.00637 | 0.94 |
62DAP/57DAP | 1.24121 | 0.723 |
68DAP/62DAP | 1.43511 | 0.22 |
68DAP/14DAP | 1.09962 | 0.521 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.96963 | 0.443 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.07499 | |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 1.79449 | 0.07 |
Ripe Pepper/Ripe Tomato | 0.24276 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.24112 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.18435 | 0.409 |
1-1-2/M82 | 0.99946 | 1 |
12-2/M82 | 0.98416 | 1 |
12-4/M82 | 0.99512 | 1 |
1-3/M82 | 1.00046 | 1 |
2-1-1/M82 | 1.24157 | 0.689 |
2-1/M82 | 2.03623 | 1 |
2-6/M82 | 1.06639 | 0.695 |
3-2/M82 | 0.9886 | |
4-1-1/M82 | 0.89023 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.82021 | 1 |
5-3/M82 | 0.9459 | 1 |
6-2/M82 | 1.20056 | 1 |
6-3/M82 | 1.03045 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.0274 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.78082 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06357 | 0.921 |
DC3000/delta hrp 6h | 0.61352 | 0.942 |
DC3000/delta hrp 12h | 1.2681 | 1 |
DC3000/delta hrp 24h | 1.02135 | 0.743 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.8777 | 0.538 |
DC3000 delta B/DC3000 delta AB | 1.11286 | 0.298 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.33967 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97018 | 1 |
Var 0h | 0.65515 | 1 |
Var 12h I row2-row1 | 1.25471 | 0.201 |
Var 12h NI row2-row1 | 1.08567 | 1 |
Var 36h I row2-row1 | 1.01806 | 1 |
Var 36h NI row2-row1 | 0.98598 | 0.852 |
Var 60h I row2-row1 | 0.98518 | 0.952 |
Var 60h NI row2-row1 | 1.03296 | 1 |
Time course 0hI-0hNI | 1.13369 | 0.662 |
Time course 12hI-12hNI | 1.17507 | 0.321 |
Time course 36hI-36hNI | 1.8453 | 0.005 |
Time course 60hI-60hNI | 2.29255 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.57838 | 0.256 |
transgenic ySAMdc/azygous control (breaker) | 0.82402 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.59469 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99062 | 0.568 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.89825 | 0.241 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.92592 | 1 |
Manapal/WT (break) | 0.64062 | 0.333 |
Manapal/WT (red) | 0.36187 | 0.181 |
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