Expression of 1-1-8.1.14.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.812570.436
27DAP/17DAP0.701450.471
39DAP/27DAP0.705790.41
41DAP/39DAP1.088920.771
42DAP/41DAP0.921611
43DAP/42DAP1.57110.962
47DAP/43DAP1.228380.715
52DAP/47DAP1.090150.964
57DAP/52DAP1.30030.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.861050.115
17DAP/reference0.908630.158
27DAP/reference0.960910.444
39DAP/reference0.909810.072
41DAP/reference0.917210.267
42DAP/reference0.803140.004
43DAP/reference0.956110.302
47DAP/reference0.904880.083
52DAP/reference0.890080.25
57DAP/reference0.998550.736

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.974980.644
27DAP/17DAP0.959760.748
39DAP/27DAP1.047330.623
41DAP/39DAP1.155350.371
42DAP/41DAP0.958140.659
43DAP/42DAP0.989160.875
47DAP/43DAP1.092480.147
52DAP/47DAP1.006060.986
57DAP/52DAP1.010251
57DAP/7DAP1.083771

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.079110.555
17DAP/referenceN/AN/A
27DAP/reference1.235790.02
39DAP/reference1.025120.865
41DAP/reference1.047570.812
42DAP/reference0.969580.014
43DAP/reference1.122170.188
47DAP/reference1.002751
52DAP/reference1.14580.183
57DAP/reference1.141320.438

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.872510.197
17DAP/reference0.68680.014
27DAP/reference0.857190.129
39DAP/reference0.830520.02
41DAP/reference0.980410.481
42DAP/reference1.013240.723
43DAP/reference0.636110.033
47DAP/reference0.893940.159
52DAP/reference0.813990.004
57DAP/reference0.722610.032

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.067730.518
17DAP/reference1.031240.988
27DAP/reference2.146550.032
39DAP/reference1.175870.189
41DAP/reference1.169380.588
42DAP/reference1.322250.031
43DAP/reference0.832710.143
47DAP/reference0.938480.325
52DAP/reference1.193020.566
57DAP/reference1.259560.027

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.027850.966
26DAP/20DAP1.060880.916
34DAP/26DAP1.018361
51DAP/34DAP0.989790.901
52DAP/51DAP0.98411
53DAP/52DAP0.988040.876
55DAP/53DAP0.90950.489
57DAP/55DAP1.006370.94
62DAP/57DAP1.241210.723
68DAP/62DAP1.435110.22
68DAP/14DAP1.099620.521

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.969630.443

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.07499
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant1.794490.07
Ripe Pepper/Ripe Tomato0.242760.293
Mature Eggplant/Ripe Tomato0.241120.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.184350.409
1-1-2/M820.999461
12-2/M820.984161
12-4/M820.995121
1-3/M821.000461
2-1-1/M821.241570.689
2-1/M822.036231
2-6/M821.066390.695
3-2/M820.9886
4-1-1/M820.89023
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M820.820211
5-3/M820.94591
6-2/M821.200561
6-3/M821.030451
7-1/M82N/AN/A
7-2/M821.02741
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.780821

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.063570.921
DC3000/delta hrp 6h0.613520.942
DC3000/delta hrp 12h1.26811
DC3000/delta hrp 24h1.021350.743

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.87770.538
DC3000 delta B/DC3000 delta AB1.112860.298

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.339671
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.970181
Var 0h0.655151
Var 12h I row2-row11.254710.201
Var 12h NI row2-row11.085671
Var 36h I row2-row11.018061
Var 36h NI row2-row10.985980.852
Var 60h I row2-row10.985180.952
Var 60h NI row2-row11.032961
Time course 0hI-0hNI1.133690.662
Time course 12hI-12hNI1.175070.321
Time course 36hI-36hNI1.84530.005
Time course 60hI-60hNI2.292550.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.578380.256
transgenic ySAMdc/azygous control (breaker)0.824020.49
transgenic ySAMdc/azygous control (red)1.594691

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.990620.568

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.898250.241

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.925921
Manapal/WT (break)0.640620.333
Manapal/WT (red)0.361870.181