Expression of 1-1-8.1.14.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08973 | 0.681 |
27DAP/17DAP | 1.19225 | 0.801 |
39DAP/27DAP | 0.94446 | 0.399 |
41DAP/39DAP | 1.19677 | 0.451 |
42DAP/41DAP | 1.02936 | 0.997 |
43DAP/42DAP | 0.97335 | 0.776 |
47DAP/43DAP | 1.12902 | 0.463 |
52DAP/47DAP | 0.92569 | 0.765 |
57DAP/52DAP | 1.01428 | 0.996 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12494 | 0.132 |
17DAP/reference | 1.08814 | 0.108 |
27DAP/reference | 1.05565 | 0.58 |
39DAP/reference | 0.98472 | 0.797 |
41DAP/reference | 1.12372 | 0.287 |
42DAP/reference | 1.09677 | 0.098 |
43DAP/reference | 1.04257 | 0.569 |
47DAP/reference | 1.02353 | 1 |
52DAP/reference | 0.89007 | 0.147 |
57DAP/reference | 0.82839 | 0.019 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0169 | 1 |
27DAP/17DAP | 0.99476 | 0.943 |
39DAP/27DAP | 1.19182 | 0.241 |
41DAP/39DAP | 0.95511 | 0.793 |
42DAP/41DAP | 0.96997 | 0.732 |
43DAP/42DAP | 1.2527 | 0.031 |
47DAP/43DAP | 1.02756 | 0.884 |
52DAP/47DAP | 1.14679 | 0.527 |
57DAP/52DAP | 1.29337 | 0.197 |
57DAP/7DAP | 1.5035 | 0.249 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86145 | 0.122 |
17DAP/reference | 0.75218 | 0.011 |
27DAP/reference | 0.81869 | 0.01 |
39DAP/reference | 0.74021 | 0.011 |
41DAP/reference | 0.77233 | 0.018 |
42DAP/reference | 0.77521 | 0.028 |
43DAP/reference | 0.71519 | 0.011 |
47DAP/reference | 0.85599 | 0.128 |
52DAP/reference | 0.67163 | 0.012 |
57DAP/reference | 0.70292 | 0.009 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00094 | 0.951 |
17DAP/reference | 1.35752 | 0.026 |
27DAP/reference | 1.13804 | 0.118 |
39DAP/reference | 1.07297 | 0.868 |
41DAP/reference | 1.12071 | 0.459 |
42DAP/reference | 1.04297 | 1 |
43DAP/reference | 1.48695 | 0.01 |
47DAP/reference | 1.08919 | 0.353 |
52DAP/reference | 1.20204 | 0.065 |
57DAP/reference | 1.06256 | 0.72 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81779 | 0.104 |
17DAP/reference | 0.94515 | 0.508 |
27DAP/reference | 0.64764 | 0.023 |
39DAP/reference | 0.71851 | 0.018 |
41DAP/reference | 0.86853 | 0.086 |
42DAP/reference | 0.92408 | 0.287 |
43DAP/reference | 0.87748 | 0.206 |
47DAP/reference | 1.22559 | 0.093 |
52DAP/reference | 0.88989 | 0.368 |
57DAP/reference | 0.89622 | 0.154 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.2615 | 0.966 |
26DAP/20DAP | 0.98645 | 1 |
34DAP/26DAP | 1.37467 | 0.542 |
51DAP/34DAP | 1.04019 | 0.73 |
52DAP/51DAP | 1.06536 | 0.565 |
53DAP/52DAP | 0.91089 | 0.484 |
55DAP/53DAP | 1.10953 | 0.622 |
57DAP/55DAP | 1.05505 | 0.947 |
62DAP/57DAP | 1.2853 | 0.393 |
68DAP/62DAP | 1.06702 | 0.939 |
68DAP/14DAP | 1.08067 | 0.739 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.4824 | 0.017 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.60689 | 0.136 |
Mature Green Tomato/Ripe Tomato | 0.90923 | 0.411 |
Immature Eggplant/Mature Eggplant | 0.35843 | 0.062 |
Ripe Pepper/Ripe Tomato | 0.42878 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.22184 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.02349 | 1 |
1-1-2/M82 | 1.02813 | 1 |
12-2/M82 | 1.16247 | 1 |
12-4/M82 | 1.03837 | 1 |
1-3/M82 | 0.96592 | 1 |
2-1-1/M82 | 1.03787 | 0.375 |
2-1/M82 | 1.19006 | 1 |
2-6/M82 | 0.97894 | 1 |
3-2/M82 | 0.95679 | 1 |
4-1-1/M82 | 0.92603 | 1 |
4-1/M82 | 1.0113 | 1 |
4-3-2/M82 | 1.01158 | 1 |
4-3/M82 | 0.93704 | 1 |
5-3/M82 | 1.031 | 1 |
6-2/M82 | 1.04456 | 1 |
6-3/M82 | 1.05393 | 1 |
7-1/M82 | 1.0404 | 0.539 |
7-2/M82 | 0.9838 | 1 |
9-3-2/M82 | 0.97318 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.67924 | |
IL2-6/WTpooled | 1.05841 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.92753 | 1 |
IL12-4/WTpooled | 0.92179 | 1 |
IL1-4/WTpooled | 1.14384 | 1 |
WT/WTpooled | 0.93296 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.21486 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05726 | 0.921 |
DC3000/delta hrp 6h | 1.02695 | 1 |
DC3000/delta hrp 12h | 1.17236 | 1 |
DC3000/delta hrp 24h | 0.96408 | 0.831 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.9153 | 0.513 |
DC3000 delta B/DC3000 delta AB | 1.13206 | 0.296 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.331 | 1 |
Exp 36h | 1.35302 | 0.489 |
Exp 60h | 1.43792 | 0.237 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00928 | 1 |
Var 0h | 0.54197 | 0.782 |
Var 12h I row2-row1 | 0.99576 | 1 |
Var 12h NI row2-row1 | 0.9471 | 0.82 |
Var 36h I row2-row1 | 1.02232 | 1 |
Var 36h NI row2-row1 | 0.91817 | 0.25 |
Var 60h I row2-row1 | 0.9385 | 0.952 |
Var 60h NI row2-row1 | 1.01592 | 1 |
Time course 0hI-0hNI | 0.96293 | 0.729 |
Time course 12hI-12hNI | 1.02787 | 0.734 |
Time course 36hI-36hNI | 1.1812 | 0.19 |
Time course 60hI-60hNI | 1.26548 | 0.08 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.97087 | 0.722 |
transgenic ySAMdc/azygous control (breaker) | 0.68757 | 0.139 |
transgenic ySAMdc/azygous control (red) | 1.23911 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.37614 | 0.035 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.43749 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.07357 | 0.14 |
Manapal/WT (break) | 1.0336 | 1 |
Manapal/WT (red) | N/A | N/A |
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