Expression of 1-1-8.1.14.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.089730.681
27DAP/17DAP1.192250.801
39DAP/27DAP0.944460.399
41DAP/39DAP1.196770.451
42DAP/41DAP1.029360.997
43DAP/42DAP0.973350.776
47DAP/43DAP1.129020.463
52DAP/47DAP0.925690.765
57DAP/52DAP1.014280.996

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.124940.132
17DAP/reference1.088140.108
27DAP/reference1.055650.58
39DAP/reference0.984720.797
41DAP/reference1.123720.287
42DAP/reference1.096770.098
43DAP/reference1.042570.569
47DAP/reference1.023531
52DAP/reference0.890070.147
57DAP/reference0.828390.019

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.01691
27DAP/17DAP0.994760.943
39DAP/27DAP1.191820.241
41DAP/39DAP0.955110.793
42DAP/41DAP0.969970.732
43DAP/42DAP1.25270.031
47DAP/43DAP1.027560.884
52DAP/47DAP1.146790.527
57DAP/52DAP1.293370.197
57DAP/7DAP1.50350.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.861450.122
17DAP/reference0.752180.011
27DAP/reference0.818690.01
39DAP/reference0.740210.011
41DAP/reference0.772330.018
42DAP/reference0.775210.028
43DAP/reference0.715190.011
47DAP/reference0.855990.128
52DAP/reference0.671630.012
57DAP/reference0.702920.009

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.000940.951
17DAP/reference1.357520.026
27DAP/reference1.138040.118
39DAP/reference1.072970.868
41DAP/reference1.120710.459
42DAP/reference1.042971
43DAP/reference1.486950.01
47DAP/reference1.089190.353
52DAP/reference1.202040.065
57DAP/reference1.062560.72

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.817790.104
17DAP/reference0.945150.508
27DAP/reference0.647640.023
39DAP/reference0.718510.018
41DAP/reference0.868530.086
42DAP/reference0.924080.287
43DAP/reference0.877480.206
47DAP/reference1.225590.093
52DAP/reference0.889890.368
57DAP/reference0.896220.154

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.26150.966
26DAP/20DAP0.986451
34DAP/26DAP1.374670.542
51DAP/34DAP1.040190.73
52DAP/51DAP1.065360.565
53DAP/52DAP0.910890.484
55DAP/53DAP1.109530.622
57DAP/55DAP1.055050.947
62DAP/57DAP1.28530.393
68DAP/62DAP1.067020.939
68DAP/14DAP1.080670.739

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.48240.017

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.606890.136
Mature Green Tomato/Ripe Tomato0.909230.411
Immature Eggplant/Mature Eggplant0.358430.062
Ripe Pepper/Ripe Tomato0.428780.224
Mature Eggplant/Ripe Tomato0.22184

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.023491
1-1-2/M821.028131
12-2/M821.162471
12-4/M821.038371
1-3/M820.965921
2-1-1/M821.037870.375
2-1/M821.190061
2-6/M820.978941
3-2/M820.956791
4-1-1/M820.926031
4-1/M821.01131
4-3-2/M821.011581
4-3/M820.937041
5-3/M821.0311
6-2/M821.044561
6-3/M821.053931
7-1/M821.04040.539
7-2/M820.98381
9-3-2/M820.973181

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.67924
IL2-6/WTpooled1.058411
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.927531
IL12-4/WTpooled0.921791
IL1-4/WTpooled1.143841
WT/WTpooled0.932961

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.214861

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.057260.921
DC3000/delta hrp 6h1.026951
DC3000/delta hrp 12h1.172361
DC3000/delta hrp 24h0.964080.831

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.91530.513
DC3000 delta B/DC3000 delta AB1.132060.296

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.3311
Exp 36h1.353020.489
Exp 60h1.437920.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.009281
Var 0h0.541970.782
Var 12h I row2-row10.995761
Var 12h NI row2-row10.94710.82
Var 36h I row2-row11.022321
Var 36h NI row2-row10.918170.25
Var 60h I row2-row10.93850.952
Var 60h NI row2-row11.015921
Time course 0hI-0hNI0.962930.729
Time course 12hI-12hNI1.027870.734
Time course 36hI-36hNI1.18120.19
Time course 60hI-60hNI1.265480.08

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.970870.722
transgenic ySAMdc/azygous control (breaker)0.687570.139
transgenic ySAMdc/azygous control (red)1.239110.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.376140.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.437490.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.073570.14
Manapal/WT (break)1.03361
Manapal/WT (red)N/AN/A