Expression of 1-1-8.1.15.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.033110.878
27DAP/17DAP1.15990.849
39DAP/27DAP0.780860.425
41DAP/39DAP1.46560.284
42DAP/41DAP1.305550.941
43DAP/42DAP0.935220.877
47DAP/43DAP1.10040.746
52DAP/47DAP1.308430.538
57DAP/52DAP0.979470.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.913140.159
17DAP/reference0.990960.858
27DAP/reference1.007371
39DAP/reference0.942510.121
41DAP/reference0.987230.814
42DAP/reference0.929410.041
43DAP/reference0.973040.519
47DAP/reference0.95110.083
52DAP/reference1.041670.766
57DAP/reference0.905350.042

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.248910.085
27DAP/17DAP1.015030.988
39DAP/27DAP0.962050.759
41DAP/39DAP0.961960.893
42DAP/41DAP1.005230.934
43DAP/42DAP0.858310.025
47DAP/43DAP0.956550.606
52DAP/47DAP1.045350.851
57DAP/52DAP0.935320.349
57DAP/7DAP1.005441

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.936840.072
17DAP/reference0.929860.044
27DAP/reference0.926470.012
39DAP/reference0.920830.039
41DAP/reference0.87140.031
42DAP/reference0.850360.017
43DAP/reference0.921150.22
47DAP/reference0.88020.079
52DAP/reference0.879570.083
57DAP/reference0.878260.042

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.982280.72
17DAP/reference0.850720.019
27DAP/reference0.86540.05
39DAP/reference0.842680.056
41DAP/reference0.856890.089
42DAP/reference0.881640.081
43DAP/reference0.995860.761
47DAP/reference0.957090.27
52DAP/reference0.937660.203
57DAP/reference0.898970.099

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.91740.065
17DAP/reference0.96430.488
27DAP/reference1.024090.531
39DAP/reference0.950630.122
41DAP/reference0.946750.185
42DAP/reference0.971240.172
43DAP/reference0.93830.226
47DAP/reference0.957870.357
52DAP/reference1.106390.517
57DAP/reference0.952040.366

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.975071
26DAP/20DAP0.94241
34DAP/26DAP1.004781
51DAP/34DAP1.033940.869
52DAP/51DAP1.028280.676
53DAP/52DAP0.977430.876
55DAP/53DAP0.960840.746
57DAP/55DAP0.926660.629
62DAP/57DAP0.977570.994
68DAP/62DAP1.261240.507
68DAP/14DAP0.894231

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.118780.14

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.192760.058
Mature Green Tomato/Ripe Tomato0.701550.072
Immature Eggplant/Mature Eggplant0.922140.594
Ripe Pepper/Ripe Tomato0.658320.293
Mature Eggplant/Ripe Tomato0.758261

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.03571
1-1-2/M821.034131
12-2/M821.102821
12-4/M820.920681
1-3/M820.923410.441
2-1-1/M821.009051
2-1/M821.172751
2-6/M821.009131
3-2/M821.02311
4-1-1/M820.973630.926
4-1/M820.969061
4-3-2/M821.090881
4-3/M821.08311
5-3/M821.024921
6-2/M821.133931
6-3/M821.035011
7-1/M820.974231
7-2/M820.937570.881
9-3-2/M821.184511

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled2.51640.274
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled2.40283
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.25810.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.973561
DC3000/delta hrp 6h1.198281
DC3000/delta hrp 12h1.152971
DC3000/delta hrp 24h1.011970.779

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.23430.06
DC3000 delta B/DC3000 delta AB1.002521

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.025791
Exp 36h1.115441
Exp 60h1.509220.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.991451
Var 0h1.085671
Var 12h I row2-row11.071140.58
Var 12h NI row2-row11.217671
Var 36h I row2-row10.990321
Var 36h NI row2-row10.915480.584
Var 60h I row2-row11.057860.562
Var 60h NI row2-row11.080830.904
Time course 0hI-0hNI1.011021
Time course 12hI-12hNI0.982850.87
Time course 36hI-36hNI0.977260.559
Time course 60hI-60hNI1.212880.019

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.959220.33
transgenic ySAMdc/azygous control (breaker)1.010581
transgenic ySAMdc/azygous control (red)0.957591

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.037580.105

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.847110.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.742340.172
Manapal/WT (break)0.737780.333
Manapal/WT (red)1.017781