Expression of 1-1-8.1.15.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03311 | 0.878 |
27DAP/17DAP | 1.1599 | 0.849 |
39DAP/27DAP | 0.78086 | 0.425 |
41DAP/39DAP | 1.4656 | 0.284 |
42DAP/41DAP | 1.30555 | 0.941 |
43DAP/42DAP | 0.93522 | 0.877 |
47DAP/43DAP | 1.1004 | 0.746 |
52DAP/47DAP | 1.30843 | 0.538 |
57DAP/52DAP | 0.97947 | 0.971 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91314 | 0.159 |
17DAP/reference | 0.99096 | 0.858 |
27DAP/reference | 1.00737 | 1 |
39DAP/reference | 0.94251 | 0.121 |
41DAP/reference | 0.98723 | 0.814 |
42DAP/reference | 0.92941 | 0.041 |
43DAP/reference | 0.97304 | 0.519 |
47DAP/reference | 0.9511 | 0.083 |
52DAP/reference | 1.04167 | 0.766 |
57DAP/reference | 0.90535 | 0.042 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.24891 | 0.085 |
27DAP/17DAP | 1.01503 | 0.988 |
39DAP/27DAP | 0.96205 | 0.759 |
41DAP/39DAP | 0.96196 | 0.893 |
42DAP/41DAP | 1.00523 | 0.934 |
43DAP/42DAP | 0.85831 | 0.025 |
47DAP/43DAP | 0.95655 | 0.606 |
52DAP/47DAP | 1.04535 | 0.851 |
57DAP/52DAP | 0.93532 | 0.349 |
57DAP/7DAP | 1.00544 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93684 | 0.072 |
17DAP/reference | 0.92986 | 0.044 |
27DAP/reference | 0.92647 | 0.012 |
39DAP/reference | 0.92083 | 0.039 |
41DAP/reference | 0.8714 | 0.031 |
42DAP/reference | 0.85036 | 0.017 |
43DAP/reference | 0.92115 | 0.22 |
47DAP/reference | 0.8802 | 0.079 |
52DAP/reference | 0.87957 | 0.083 |
57DAP/reference | 0.87826 | 0.042 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98228 | 0.72 |
17DAP/reference | 0.85072 | 0.019 |
27DAP/reference | 0.8654 | 0.05 |
39DAP/reference | 0.84268 | 0.056 |
41DAP/reference | 0.85689 | 0.089 |
42DAP/reference | 0.88164 | 0.081 |
43DAP/reference | 0.99586 | 0.761 |
47DAP/reference | 0.95709 | 0.27 |
52DAP/reference | 0.93766 | 0.203 |
57DAP/reference | 0.89897 | 0.099 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9174 | 0.065 |
17DAP/reference | 0.9643 | 0.488 |
27DAP/reference | 1.02409 | 0.531 |
39DAP/reference | 0.95063 | 0.122 |
41DAP/reference | 0.94675 | 0.185 |
42DAP/reference | 0.97124 | 0.172 |
43DAP/reference | 0.9383 | 0.226 |
47DAP/reference | 0.95787 | 0.357 |
52DAP/reference | 1.10639 | 0.517 |
57DAP/reference | 0.95204 | 0.366 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97507 | 1 |
26DAP/20DAP | 0.9424 | 1 |
34DAP/26DAP | 1.00478 | 1 |
51DAP/34DAP | 1.03394 | 0.869 |
52DAP/51DAP | 1.02828 | 0.676 |
53DAP/52DAP | 0.97743 | 0.876 |
55DAP/53DAP | 0.96084 | 0.746 |
57DAP/55DAP | 0.92666 | 0.629 |
62DAP/57DAP | 0.97757 | 0.994 |
68DAP/62DAP | 1.26124 | 0.507 |
68DAP/14DAP | 0.89423 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.11878 | 0.14 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.19276 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.70155 | 0.072 |
Immature Eggplant/Mature Eggplant | 0.92214 | 0.594 |
Ripe Pepper/Ripe Tomato | 0.65832 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.75826 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.0357 | 1 |
1-1-2/M82 | 1.03413 | 1 |
12-2/M82 | 1.10282 | 1 |
12-4/M82 | 0.92068 | 1 |
1-3/M82 | 0.92341 | 0.441 |
2-1-1/M82 | 1.00905 | 1 |
2-1/M82 | 1.17275 | 1 |
2-6/M82 | 1.00913 | 1 |
3-2/M82 | 1.0231 | 1 |
4-1-1/M82 | 0.97363 | 0.926 |
4-1/M82 | 0.96906 | 1 |
4-3-2/M82 | 1.09088 | 1 |
4-3/M82 | 1.0831 | 1 |
5-3/M82 | 1.02492 | 1 |
6-2/M82 | 1.13393 | 1 |
6-3/M82 | 1.03501 | 1 |
7-1/M82 | 0.97423 | 1 |
7-2/M82 | 0.93757 | 0.881 |
9-3-2/M82 | 1.18451 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 2.5164 | 0.274 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 2.40283 | |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.2581 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97356 | 1 |
DC3000/delta hrp 6h | 1.19828 | 1 |
DC3000/delta hrp 12h | 1.15297 | 1 |
DC3000/delta hrp 24h | 1.01197 | 0.779 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.2343 | 0.06 |
DC3000 delta B/DC3000 delta AB | 1.00252 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.02579 | 1 |
Exp 36h | 1.11544 | 1 |
Exp 60h | 1.50922 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99145 | 1 |
Var 0h | 1.08567 | 1 |
Var 12h I row2-row1 | 1.07114 | 0.58 |
Var 12h NI row2-row1 | 1.21767 | 1 |
Var 36h I row2-row1 | 0.99032 | 1 |
Var 36h NI row2-row1 | 0.91548 | 0.584 |
Var 60h I row2-row1 | 1.05786 | 0.562 |
Var 60h NI row2-row1 | 1.08083 | 0.904 |
Time course 0hI-0hNI | 1.01102 | 1 |
Time course 12hI-12hNI | 0.98285 | 0.87 |
Time course 36hI-36hNI | 0.97726 | 0.559 |
Time course 60hI-60hNI | 1.21288 | 0.019 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.95922 | 0.33 |
transgenic ySAMdc/azygous control (breaker) | 1.01058 | 1 |
transgenic ySAMdc/azygous control (red) | 0.95759 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03758 | 0.105 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.84711 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.74234 | 0.172 |
Manapal/WT (break) | 0.73778 | 0.333 |
Manapal/WT (red) | 1.01778 | 1 |
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