Expression of 1-1-8.1.16.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01889 | 0.847 |
27DAP/17DAP | 0.90955 | 0.81 |
39DAP/27DAP | 1.46248 | 0.206 |
41DAP/39DAP | 1.09342 | 0.822 |
42DAP/41DAP | 1.49395 | 0.091 |
43DAP/42DAP | 0.95494 | 0.898 |
47DAP/43DAP | 0.90705 | 0.68 |
52DAP/47DAP | 1.13195 | 0.945 |
57DAP/52DAP | 1.03205 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98441 | 0.601 |
17DAP/reference | 1.17976 | 0.012 |
27DAP/reference | 1.04387 | 0.446 |
39DAP/reference | 1.07577 | 0.301 |
41DAP/reference | 1.09575 | 0.085 |
42DAP/reference | 0.94312 | 0.124 |
43DAP/reference | 1.00088 | 1 |
47DAP/reference | 0.96693 | 0.258 |
52DAP/reference | 0.92265 | 0.267 |
57DAP/reference | 0.9169 | 0.147 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.61249 | 0.086 |
27DAP/17DAP | 0.9254 | 0.782 |
39DAP/27DAP | 1.91246 | 0.063 |
41DAP/39DAP | 0.56457 | 0.013 |
42DAP/41DAP | 1.66785 | 0.091 |
43DAP/42DAP | 3.85104 | 0.013 |
47DAP/43DAP | 1.06597 | 0.724 |
52DAP/47DAP | 1.17226 | 0.517 |
57DAP/52DAP | 0.90051 | 0.445 |
57DAP/7DAP | 1.20629 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.52727 | 0.037 |
17DAP/reference | 1.47484 | 0.006 |
27DAP/reference | 1.46033 | 0.007 |
39DAP/reference | 1.62991 | 0.014 |
41DAP/reference | 1.45162 | 0.013 |
42DAP/reference | 1.52878 | 0.016 |
43DAP/reference | 1.60221 | 0.007 |
47DAP/reference | 1.193 | 0.48 |
52DAP/reference | 1.50414 | 0.007 |
57DAP/reference | 1.3096 | 0.008 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04784 | 0.75 |
17DAP/reference | 0.88226 | 0.102 |
27DAP/reference | 0.76754 | 0.035 |
39DAP/reference | 0.80832 | 0.093 |
41DAP/reference | 0.85804 | 0.073 |
42DAP/reference | 0.95918 | 0.433 |
43DAP/reference | 0.97529 | 0.569 |
47DAP/reference | 1.00164 | 1 |
52DAP/reference | 0.91615 | 0.143 |
57DAP/reference | 1.00306 | 0.916 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.29647 | 0.112 |
17DAP/reference | 1.06477 | 0.842 |
27DAP/reference | 1.35035 | 0.029 |
39DAP/reference | 1.33389 | 0.012 |
41DAP/reference | 1.22112 | 0.04 |
42DAP/reference | 1.24351 | 0.265 |
43DAP/reference | 1.11159 | 0.388 |
47DAP/reference | 1.00755 | 0.708 |
52DAP/reference | 1.29192 | 0.17 |
57DAP/reference | 0.8098 | 0.138 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.07687 | 0.966 |
26DAP/20DAP | 0.74725 | |
34DAP/26DAP | 1.26948 | 0.542 |
51DAP/34DAP | 0.94182 | 0.791 |
52DAP/51DAP | 1.2612 | 0.742 |
53DAP/52DAP | 1.14319 | 1 |
55DAP/53DAP | 0.94566 | 0.775 |
57DAP/55DAP | 1.09993 | 0.997 |
62DAP/57DAP | 1.02275 | 1 |
68DAP/62DAP | 1.16918 | 0.7 |
68DAP/14DAP | 0.83682 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.8255 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.33608 | 0.073 |
Mature Green Tomato/Ripe Tomato | 0.66912 | 0.024 |
Immature Eggplant/Mature Eggplant | 1.1205 | 0.19 |
Ripe Pepper/Ripe Tomato | 1.12021 | 1 |
Mature Eggplant/Ripe Tomato | 0.13339 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.44296 | 0.591 |
1-1-2/M82 | 1.07665 | 1 |
12-2/M82 | 1.01146 | 0.61 |
12-4/M82 | 0.92467 | 0.619 |
1-3/M82 | 1.39404 | 0.479 |
2-1-1/M82 | 1.06013 | 1 |
2-1/M82 | 1.00693 | 1 |
2-6/M82 | 0.88136 | 1 |
3-2/M82 | 1.64493 | |
4-1-1/M82 | 1.14717 | 1 |
4-1/M82 | 0.86833 | 1 |
4-3-2/M82 | 0.82576 | |
4-3/M82 | 1.53087 | 1 |
5-3/M82 | 0.93446 | 1 |
6-2/M82 | 1.12818 | 1 |
6-3/M82 | 1.10417 | 1 |
7-1/M82 | 0.94152 | |
7-2/M82 | 1.06963 | 1 |
9-3-2/M82 | 0.9822 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.56177 | 0.395 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.62382 | 0.294 |
IL12-4/WTpooled | 0.99886 | 1 |
IL1-4/WTpooled | 0.93497 | |
WT/WTpooled | 1.03086 | 0.87 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.65032 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05967 | 0.921 |
DC3000/delta hrp 6h | 0.68105 | 0.874 |
DC3000/delta hrp 12h | 1.15676 | 1 |
DC3000/delta hrp 24h | 0.91084 | 0.387 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.95171 | 1 |
Exp 36h | 0.70134 | 0.419 |
Exp 60h | 0.94803 | 0.586 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99218 | 1 |
Var 0h | 1.21159 | 1 |
Var 12h I row2-row1 | 1.07377 | 0.204 |
Var 12h NI row2-row1 | 0.86202 | 0.546 |
Var 36h I row2-row1 | 1.00736 | 1 |
Var 36h NI row2-row1 | 2.29808 | 1 |
Var 60h I row2-row1 | 0.82947 | 0.832 |
Var 60h NI row2-row1 | 1.06333 | 1 |
Time course 0hI-0hNI | 1.00796 | 1 |
Time course 12hI-12hNI | 0.83794 | 0.088 |
Time course 36hI-36hNI | 0.70072 | 0.023 |
Time course 60hI-60hNI | 0.33339 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9409 | 0.409 |
transgenic ySAMdc/azygous control (breaker) | 0.92479 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.08029 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9778 | 0.107 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.92117 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.33474 | 0.093 |
Manapal/WT (break) | 0.89336 | 1 |
Manapal/WT (red) | 1.06513 | 1 |
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