Expression of 1-1-8.1.16.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.018890.847
27DAP/17DAP0.909550.81
39DAP/27DAP1.462480.206
41DAP/39DAP1.093420.822
42DAP/41DAP1.493950.091
43DAP/42DAP0.954940.898
47DAP/43DAP0.907050.68
52DAP/47DAP1.131950.945
57DAP/52DAP1.032051

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.984410.601
17DAP/reference1.179760.012
27DAP/reference1.043870.446
39DAP/reference1.075770.301
41DAP/reference1.095750.085
42DAP/reference0.943120.124
43DAP/reference1.000881
47DAP/reference0.966930.258
52DAP/reference0.922650.267
57DAP/reference0.91690.147

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.612490.086
27DAP/17DAP0.92540.782
39DAP/27DAP1.912460.063
41DAP/39DAP0.564570.013
42DAP/41DAP1.667850.091
43DAP/42DAP3.851040.013
47DAP/43DAP1.065970.724
52DAP/47DAP1.172260.517
57DAP/52DAP0.900510.445
57DAP/7DAP1.206291

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.527270.037
17DAP/reference1.474840.006
27DAP/reference1.460330.007
39DAP/reference1.629910.014
41DAP/reference1.451620.013
42DAP/reference1.528780.016
43DAP/reference1.602210.007
47DAP/reference1.1930.48
52DAP/reference1.504140.007
57DAP/reference1.30960.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.047840.75
17DAP/reference0.882260.102
27DAP/reference0.767540.035
39DAP/reference0.808320.093
41DAP/reference0.858040.073
42DAP/reference0.959180.433
43DAP/reference0.975290.569
47DAP/reference1.001641
52DAP/reference0.916150.143
57DAP/reference1.003060.916

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.296470.112
17DAP/reference1.064770.842
27DAP/reference1.350350.029
39DAP/reference1.333890.012
41DAP/reference1.221120.04
42DAP/reference1.243510.265
43DAP/reference1.111590.388
47DAP/reference1.007550.708
52DAP/reference1.291920.17
57DAP/reference0.80980.138

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.076870.966
26DAP/20DAP0.74725
34DAP/26DAP1.269480.542
51DAP/34DAP0.941820.791
52DAP/51DAP1.26120.742
53DAP/52DAP1.143191
55DAP/53DAP0.945660.775
57DAP/55DAP1.099930.997
62DAP/57DAP1.022751
68DAP/62DAP1.169180.7
68DAP/14DAP0.836820.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.82550.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.336080.073
Mature Green Tomato/Ripe Tomato0.669120.024
Immature Eggplant/Mature Eggplant1.12050.19
Ripe Pepper/Ripe Tomato1.120211
Mature Eggplant/Ripe Tomato0.133390.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.442960.591
1-1-2/M821.076651
12-2/M821.011460.61
12-4/M820.924670.619
1-3/M821.394040.479
2-1-1/M821.060131
2-1/M821.006931
2-6/M820.881361
3-2/M821.64493
4-1-1/M821.147171
4-1/M820.868331
4-3-2/M820.82576
4-3/M821.530871
5-3/M820.934461
6-2/M821.128181
6-3/M821.104171
7-1/M820.94152
7-2/M821.069631
9-3-2/M820.98221

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.561770.395
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.623820.294
IL12-4/WTpooled0.998861
IL1-4/WTpooled0.93497
WT/WTpooled1.030860.87

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.650320.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.059670.921
DC3000/delta hrp 6h0.681050.874
DC3000/delta hrp 12h1.156761
DC3000/delta hrp 24h0.910840.387

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.951711
Exp 36h0.701340.419
Exp 60h0.948030.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.992181
Var 0h1.211591
Var 12h I row2-row11.073770.204
Var 12h NI row2-row10.862020.546
Var 36h I row2-row11.007361
Var 36h NI row2-row12.298081
Var 60h I row2-row10.829470.832
Var 60h NI row2-row11.063331
Time course 0hI-0hNI1.007961
Time course 12hI-12hNI0.837940.088
Time course 36hI-36hNI0.700720.023
Time course 60hI-60hNI0.333390.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.94090.409
transgenic ySAMdc/azygous control (breaker)0.924790.49
transgenic ySAMdc/azygous control (red)1.080290.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.97780.107

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.921170.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.334740.093
Manapal/WT (break)0.893361
Manapal/WT (red)1.065131