Expression of 1-1-8.1.16.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.17898 | 0.927 |
27DAP/17DAP | 0.73379 | 0.271 |
39DAP/27DAP | 1.14085 | 0.762 |
41DAP/39DAP | 0.93414 | 0.724 |
42DAP/41DAP | 1.01341 | 1 |
43DAP/42DAP | 0.88947 | 0.806 |
47DAP/43DAP | 1.22692 | 0.391 |
52DAP/47DAP | 0.92147 | 0.721 |
57DAP/52DAP | 1.16673 | 0.853 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.34928 | 0.024 |
17DAP/reference | 0.11308 | 0.007 |
27DAP/reference | 0.10139 | 0.009 |
39DAP/reference | 0.13522 | 0.007 |
41DAP/reference | 0.10547 | 0.008 |
42DAP/reference | 0.21372 | 0.001 |
43DAP/reference | 0.13513 | 0.012 |
47DAP/reference | 0.13802 | 0.001 |
52DAP/reference | 0.15545 | 0.012 |
57DAP/reference | 0.22228 | 0.007 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.67523 | 0.073 |
27DAP/17DAP | 0.99451 | 0.969 |
39DAP/27DAP | 1.09733 | 0.677 |
41DAP/39DAP | 0.88149 | 0.398 |
42DAP/41DAP | 1.07833 | 0.999 |
43DAP/42DAP | 0.97056 | 0.801 |
47DAP/43DAP | 0.961 | 0.846 |
52DAP/47DAP | 1.19601 | 0.517 |
57DAP/52DAP | 0.89127 | 0.382 |
57DAP/7DAP | 0.96886 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.40073 | 0.044 |
17DAP/reference | 0.3054 | 0.008 |
27DAP/reference | 0.31762 | 0.01 |
39DAP/reference | 0.2994 | 0.011 |
41DAP/reference | 0.81952 | 0.133 |
42DAP/reference | 0.54939 | 0.017 |
43DAP/reference | 0.36865 | 0.01 |
47DAP/reference | 0.24725 | 0.033 |
52DAP/reference | 0.30624 | 0.009 |
57DAP/reference | 0.27555 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.35059 | 0.008 |
17DAP/reference | 0.13251 | 0.003 |
27DAP/reference | 0.11925 | 0.005 |
39DAP/reference | 0.10096 | 0.007 |
41DAP/reference | 0.30864 | 0.007 |
42DAP/reference | 0.36066 | 0.017 |
43DAP/reference | 0.18361 | 0.002 |
47DAP/reference | 0.23891 | 0.007 |
52DAP/reference | 0.11497 | 0.003 |
57DAP/reference | 0.21985 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.34279 | 0.044 |
17DAP/reference | 0.58538 | 0.078 |
27DAP/reference | 0.24446 | 0.023 |
39DAP/reference | 0.24001 | 0.008 |
41DAP/reference | 0.26263 | 0.014 |
42DAP/reference | 0.34532 | 0.014 |
43DAP/reference | 0.24528 | 0.016 |
47DAP/reference | 0.1056 | 0.004 |
52DAP/reference | 0.26105 | 0.06 |
57DAP/reference | 0.26064 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.23244 | 0.966 |
26DAP/20DAP | 1.30905 | 0.308 |
34DAP/26DAP | 1.29868 | 1 |
51DAP/34DAP | 1.74707 | 0.185 |
52DAP/51DAP | 1.33044 | 0.171 |
53DAP/52DAP | 0.99399 | 0.951 |
55DAP/53DAP | 1.0508 | 0.719 |
57DAP/55DAP | 1.10893 | 0.935 |
62DAP/57DAP | 1.19547 | 1 |
68DAP/62DAP | 1.0089 | 1 |
68DAP/14DAP | 2.18816 | 0.053 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.13813 | 0.908 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.43088 | 0.081 |
Mature Green Tomato/Ripe Tomato | 2.04769 | 0.018 |
Immature Eggplant/Mature Eggplant | 5.6784 | 0.05 |
Ripe Pepper/Ripe Tomato | 3.74637 | 0.256 |
Mature Eggplant/Ripe Tomato | 1.62142 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.08251 | 1 |
1-1-2/M82 | 1.16006 | 1 |
12-2/M82 | 1.21974 | 0.61 |
12-4/M82 | 1.25661 | 1 |
1-3/M82 | 0.82471 | 0.441 |
2-1-1/M82 | 1.01727 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.02869 | 1 |
3-2/M82 | 1.04556 | |
4-1-1/M82 | 1.08407 | 1 |
4-1/M82 | 0.84618 | |
4-3-2/M82 | 0.95128 | 1 |
4-3/M82 | 1.04244 | 1 |
5-3/M82 | 1.01201 | 1 |
6-2/M82 | 1.05318 | 1 |
6-3/M82 | 1.09853 | 1 |
7-1/M82 | 1.17567 | |
7-2/M82 | 0.74917 | 0.46 |
9-3-2/M82 | 1.06976 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.12416 | 0.493 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.17117 | |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.07851 | 1 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.66956 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.14028 | 0.921 |
DC3000/delta hrp 6h | 1.30892 | 0.392 |
DC3000/delta hrp 12h | 0.44551 | 1 |
DC3000/delta hrp 24h | 3.10784 | 0.033 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.7633 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.54339 | 0.081 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.02929 | 0.254 |
Exp 36h | 0.93147 | 0.699 |
Exp 60h | 1.05405 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99669 | 1 |
Var 0h | 1.35079 | 0.374 |
Var 12h I row2-row1 | 1.01634 | 0.692 |
Var 12h NI row2-row1 | 0.9947 | 1 |
Var 36h I row2-row1 | 0.96278 | 0.805 |
Var 36h NI row2-row1 | 1.02098 | 1 |
Var 60h I row2-row1 | 0.91954 | 0.832 |
Var 60h NI row2-row1 | 0.84975 | 0.572 |
Time course 0hI-0hNI | 1.04055 | 0.852 |
Time course 12hI-12hNI | 0.95861 | 0.687 |
Time course 36hI-36hNI | 0.93689 | 0.119 |
Time course 60hI-60hNI | 0.70542 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.77915 | 0.246 |
transgenic ySAMdc/azygous control (breaker) | 0.87742 | 1 |
transgenic ySAMdc/azygous control (red) | 1.21306 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99219 | 0.486 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.86138 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.19391 | 0.307 |
Manapal/WT (break) | 0.58655 | 1 |
Manapal/WT (red) | 2.89796 | 0.15 |
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