Expression of 1-1-8.1.16.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.178980.927
27DAP/17DAP0.733790.271
39DAP/27DAP1.140850.762
41DAP/39DAP0.934140.724
42DAP/41DAP1.013411
43DAP/42DAP0.889470.806
47DAP/43DAP1.226920.391
52DAP/47DAP0.921470.721
57DAP/52DAP1.166730.853

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.349280.024
17DAP/reference0.113080.007
27DAP/reference0.101390.009
39DAP/reference0.135220.007
41DAP/reference0.105470.008
42DAP/reference0.213720.001
43DAP/reference0.135130.012
47DAP/reference0.138020.001
52DAP/reference0.155450.012
57DAP/reference0.222280.007

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.675230.073
27DAP/17DAP0.994510.969
39DAP/27DAP1.097330.677
41DAP/39DAP0.881490.398
42DAP/41DAP1.078330.999
43DAP/42DAP0.970560.801
47DAP/43DAP0.9610.846
52DAP/47DAP1.196010.517
57DAP/52DAP0.891270.382
57DAP/7DAP0.968861

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.400730.044
17DAP/reference0.30540.008
27DAP/reference0.317620.01
39DAP/reference0.29940.011
41DAP/reference0.819520.133
42DAP/reference0.549390.017
43DAP/reference0.368650.01
47DAP/reference0.247250.033
52DAP/reference0.306240.009
57DAP/reference0.275550.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.350590.008
17DAP/reference0.132510.003
27DAP/reference0.119250.005
39DAP/reference0.100960.007
41DAP/reference0.308640.007
42DAP/reference0.360660.017
43DAP/reference0.183610.002
47DAP/reference0.238910.007
52DAP/reference0.114970.003
57DAP/reference0.219850.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.342790.044
17DAP/reference0.585380.078
27DAP/reference0.244460.023
39DAP/reference0.240010.008
41DAP/reference0.262630.014
42DAP/reference0.345320.014
43DAP/reference0.245280.016
47DAP/reference0.10560.004
52DAP/reference0.261050.06
57DAP/reference0.260640.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.232440.966
26DAP/20DAP1.309050.308
34DAP/26DAP1.298681
51DAP/34DAP1.747070.185
52DAP/51DAP1.330440.171
53DAP/52DAP0.993990.951
55DAP/53DAP1.05080.719
57DAP/55DAP1.108930.935
62DAP/57DAP1.195471
68DAP/62DAP1.00891
68DAP/14DAP2.188160.053

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.138130.908

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.430880.081
Mature Green Tomato/Ripe Tomato2.047690.018
Immature Eggplant/Mature Eggplant5.67840.05
Ripe Pepper/Ripe Tomato3.746370.256
Mature Eggplant/Ripe Tomato1.621421

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.082511
1-1-2/M821.160061
12-2/M821.219740.61
12-4/M821.256611
1-3/M820.824710.441
2-1-1/M821.017271
2-1/M82N/AN/A
2-6/M821.028691
3-2/M821.04556
4-1-1/M821.084071
4-1/M820.84618
4-3-2/M820.951281
4-3/M821.042441
5-3/M821.012011
6-2/M821.053181
6-3/M821.098531
7-1/M821.17567
7-2/M820.749170.46
9-3-2/M821.069761

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.124160.493
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.17117
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.078511
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.669560.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.140280.921
DC3000/delta hrp 6h1.308920.392
DC3000/delta hrp 12h0.445511
DC3000/delta hrp 24h3.107840.033

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.76330.042
DC3000 delta B/DC3000 delta AB1.543390.081

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.029290.254
Exp 36h0.931470.699
Exp 60h1.054051

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.996691
Var 0h1.350790.374
Var 12h I row2-row11.016340.692
Var 12h NI row2-row10.99471
Var 36h I row2-row10.962780.805
Var 36h NI row2-row11.020981
Var 60h I row2-row10.919540.832
Var 60h NI row2-row10.849750.572
Time course 0hI-0hNI1.040550.852
Time course 12hI-12hNI0.958610.687
Time course 36hI-36hNI0.936890.119
Time course 60hI-60hNI0.705420.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.779150.246
transgenic ySAMdc/azygous control (breaker)0.877421
transgenic ySAMdc/azygous control (red)1.213060.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.992190.486

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.861380.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.193910.307
Manapal/WT (break)0.586551
Manapal/WT (red)2.897960.15