Expression of 1-1-8.1.17.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.171580.878
27DAP/17DAP1.051291
39DAP/27DAP1.397260.236
41DAP/39DAP0.851620.419
42DAP/41DAP0.71670.774
43DAP/42DAP0.897360.806
47DAP/43DAP0.4660.05
52DAP/47DAP1.357980.451
57DAP/52DAP1.042820.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.255330.154
17DAP/reference1.09760.565
27DAP/reference1.190080.258
39DAP/reference1.252490.059
41DAP/reference1.323640.014
42DAP/reference0.895950.157
43DAP/reference1.079130.646
47DAP/reference1.005690.602
52DAP/reference1.236780.272
57DAP/reference0.942360.358

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.882050.442
27DAP/17DAP1.202540.645
39DAP/27DAP0.631280.046
41DAP/39DAP0.919510.68
42DAP/41DAP0.859060.172
43DAP/42DAP1.125210.699
47DAP/43DAP0.986390.93
52DAP/47DAP0.9110.71
57DAP/52DAP1.037310.874
57DAP/7DAP1.120061

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.364530.298
17DAP/reference1.34620.07
27DAP/reference1.04250.664
39DAP/reference0.759130.014
41DAP/reference0.971020.489
42DAP/reference1.090690.308
43DAP/reference0.975750.48
47DAP/reference1.000391
52DAP/reference1.025570.781
57DAP/reference1.124890.331

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.191710.823
17DAP/reference1.054790.924
27DAP/reference1.109421
39DAP/reference1.087910.556
41DAP/reference1.04090.666
42DAP/reference1.353070.091
43DAP/reference1.238410.029
47DAP/reference1.006941
52DAP/reference1.127880.938
57DAP/reference1.029551

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.982970.607
17DAP/reference0.893010.286
27DAP/reference1.017880.934
39DAP/reference1.010380.755
41DAP/reference0.863040.148
42DAP/reference0.961770.552
43DAP/reference1.419190.336
47DAP/reference0.953130.465
52DAP/reference0.950540.573
57DAP/reference1.532440.2

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.887681
26DAP/20DAP2.321480.097
34DAP/26DAP0.820180.431
51DAP/34DAP0.719070.081
52DAP/51DAP1.028840.842
53DAP/52DAP0.811340.259
55DAP/53DAP0.722990.159
57DAP/55DAP1.297180.694
62DAP/57DAP0.867660.466
68DAP/62DAP1.341240.944
68DAP/14DAP2.70948

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.415560.02

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato2.796560.016
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato8.189320.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M821.32454
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.11168
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M820.8568

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.17180.365
IL2-6/WTpooled1.048460.531
IL7-5/WTpooled1.080251
IL7-3/WTpooled1.065631
IL12-4/WTpooled1.068050.785
IL1-4/WTpooled1.308071
WT/WTpooled1.062071

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.852090.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.162440.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h0.927590.598

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.586460.031
DC3000 delta B/DC3000 delta AB0.810570.253

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.994281
Var 0h0.969921
Var 12h I row2-row11.139440.58
Var 12h NI row2-row11.304950.649
Var 36h I row2-row11.302590.601
Var 36h NI row2-row10.991410.852
Var 60h I row2-row10.763020.439
Var 60h NI row2-row11.029411
Time course 0hI-0hNI1.020111
Time course 12hI-12hNI1.133390.072
Time course 36hI-36hNI1.077630.722
Time course 60hI-60hNI0.895050.161

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.923130.046

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.189370.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A