Expression of 1-1-8.1.17.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.28601 | 0.381 |
27DAP/17DAP | 0.85527 | 0.749 |
39DAP/27DAP | 1.34679 | 0.729 |
41DAP/39DAP | 0.68314 | 0.171 |
42DAP/41DAP | 0.77756 | 0.774 |
43DAP/42DAP | 1.18153 | 0.937 |
47DAP/43DAP | 0.90709 | 0.625 |
52DAP/47DAP | 1.62181 | 0.601 |
57DAP/52DAP | 1.75152 | 0.694 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10022 | 0.116 |
17DAP/reference | 1.01322 | 0.874 |
27DAP/reference | 0.86223 | 0.054 |
39DAP/reference | 0.85254 | 0.228 |
41DAP/reference | 0.85054 | 0.021 |
42DAP/reference | 0.91426 | 0.129 |
43DAP/reference | 0.8696 | 0.026 |
47DAP/reference | 0.85213 | 0.016 |
52DAP/reference | 0.98528 | 0.504 |
57DAP/reference | 0.95461 | 0.235 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.82288 | 0.251 |
27DAP/17DAP | 0.85254 | 0.614 |
39DAP/27DAP | 1.17072 | 0.565 |
41DAP/39DAP | 0.88606 | 0.53 |
42DAP/41DAP | 0.98328 | 0.795 |
43DAP/42DAP | 1.06924 | 0.699 |
47DAP/43DAP | 1.01265 | 0.997 |
52DAP/47DAP | 0.97241 | 0.901 |
57DAP/52DAP | 0.91082 | 0.587 |
57DAP/7DAP | 0.743 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07088 | 0.676 |
17DAP/reference | 0.94636 | 0.338 |
27DAP/reference | 1.07441 | 0.804 |
39DAP/reference | 1.07133 | 0.436 |
41DAP/reference | 0.94292 | 0.311 |
42DAP/reference | 1.01755 | 0.713 |
43DAP/reference | 1.02509 | 0.764 |
47DAP/reference | 1.05007 | 1 |
52DAP/reference | 0.84085 | 0.126 |
57DAP/reference | 0.9317 | 0.25 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00909 | 0.951 |
17DAP/reference | 0.983 | 0.659 |
27DAP/reference | 0.90868 | 0.24 |
39DAP/reference | 0.82664 | 0.064 |
41DAP/reference | 0.87469 | 0.124 |
42DAP/reference | 0.93794 | 0.15 |
43DAP/reference | 0.98657 | 0.67 |
47DAP/reference | 0.9049 | 0.159 |
52DAP/reference | 0.90978 | 0.22 |
57DAP/reference | 0.59498 | 0.004 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94606 | 0.422 |
17DAP/reference | 0.9706 | 0.615 |
27DAP/reference | 0.84566 | 0.058 |
39DAP/reference | 0.78878 | 0.05 |
41DAP/reference | 1.01921 | 1 |
42DAP/reference | 0.91378 | 0.445 |
43DAP/reference | 0.91867 | 0.197 |
47DAP/reference | 0.826 | 0.052 |
52DAP/reference | 0.75507 | 0.144 |
57DAP/reference | 0.85414 | 0.041 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.22966 | 0.966 |
26DAP/20DAP | 0.77125 | 0.512 |
34DAP/26DAP | 0.96222 | 0.944 |
51DAP/34DAP | 1.14422 | 0.785 |
52DAP/51DAP | 0.85389 | 1 |
53DAP/52DAP | 1.48223 | 0.413 |
55DAP/53DAP | 1.17492 | 0.614 |
57DAP/55DAP | 1.62611 | 0.666 |
62DAP/57DAP | 1.10746 | 0.935 |
68DAP/62DAP | 0.79554 | 0.641 |
68DAP/14DAP | 1.00335 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.86746 | 0.224 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.37526 | 0.058 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 1.03192 | 1 |
Ripe Pepper/Ripe Tomato | 2.36652 | |
Mature Eggplant/Ripe Tomato | 2.45982 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.41501 | 0.277 |
IL2-6/WTpooled | 1.38733 | 0.419 |
IL7-5/WTpooled | 1.04207 | 1 |
IL7-3/WTpooled | 0.93994 | 1 |
IL12-4/WTpooled | 1.391 | 0.595 |
IL1-4/WTpooled | 1.0921 | 1 |
WT/WTpooled | 1.0144 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99379 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.06214 | 1 |
DC3000/delta hrp 24h | 1.04207 | 0.797 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.04655 | 1 |
Exp 36h | 1.09257 | 1 |
Exp 60h | 1.43609 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.85709 | 0.291 |
Var 12h I row2-row1 | 0.80112 | 0.77 |
Var 12h NI row2-row1 | 0.3187 | |
Var 36h I row2-row1 | 0.77862 | 0.805 |
Var 36h NI row2-row1 | 6.2958 | |
Var 60h I row2-row1 | 0.77408 | 0.952 |
Var 60h NI row2-row1 | 2.65551 | |
Time course 0hI-0hNI | 1.14351 | 0.246 |
Time course 12hI-12hNI | 1.0362 | 0.854 |
Time course 36hI-36hNI | 0.78949 | 0.159 |
Time course 60hI-60hNI | 1.16255 | 0.06 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.6715 | 0.213 |
transgenic ySAMdc/azygous control (breaker) | 0.9545 | 1 |
transgenic ySAMdc/azygous control (red) | 1.15645 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98198 | 0.694 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.9351 | 0.268 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.00135 | 1 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.28271 | 0.133 |
|
|