Tomato Functional Genomics Database (TFGD)

Expression of 1-1-8.1.18.5

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.99513	0.891
27DAP/17DAP	0.7466	0.324
39DAP/27DAP	0.90126	0.462
41DAP/39DAP	1.15997	0.722
42DAP/41DAP	0.92563	1
43DAP/42DAP	0.69976	0.462
47DAP/43DAP	0.83975	0.496
52DAP/47DAP	1.49409	0.425
57DAP/52DAP	1.04601	1

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.10262	0.384
17DAP/reference	0.83331	0.069
27DAP/reference	1.06993	0.88
39DAP/reference	0.90873	0.36
41DAP/reference	0.64464	0.01
42DAP/reference	0.9225	0.157
43DAP/reference	0.98495	0.763
47DAP/reference	0.93897	0.258
52DAP/reference	1.38834	0.017
57DAP/reference	1.35432	0.01

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.03945	0.719
27DAP/17DAP	0.98631	0.919
39DAP/27DAP	0.75454	0.036
41DAP/39DAP	1.42997	0.026
42DAP/41DAP	0.98641	0.84
43DAP/42DAP	0.68713	0.022
47DAP/43DAP	1.04335	0.88
52DAP/47DAP	0.94785	0.778
57DAP/52DAP	0.99293	0.852
57DAP/7DAP	1.20953	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.58681	0.03
17DAP/reference	1.23146	0.011
27DAP/reference	1.1882	0.023
39DAP/reference	1.02363	1
41DAP/reference	1.08088	0.109
42DAP/reference	0.88189	0.07
43DAP/reference	0.97977	0.48
47DAP/reference	0.9885	0.671
52DAP/reference	0.90395	0.137
57DAP/reference	0.81844	0.019

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.95031	0.426
17DAP/reference	0.78988	0.005
27DAP/reference	0.97934	0.519
39DAP/reference	1.1956	0.316
41DAP/reference	1.14039	0.335
42DAP/reference	1.08233	0.61
43DAP/reference	0.71048	0.056
47DAP/reference	0.76938	0.01
52DAP/reference	0.87288	0.04
57DAP/reference	0.6827	0.018

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.252	0.18
17DAP/reference	0.95246	0.55
27DAP/reference	1.06941	0.575
39DAP/reference	0.96549	0.504
41DAP/reference	1.0734	0.537
42DAP/reference	1.23385	0.51
43DAP/reference	1.0589	0.815
47DAP/reference	0.94417	0.371
52DAP/reference	0.8574	0.334
57DAP/reference	1.87814	0.017

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.82441	0.841
26DAP/20DAP	1.04701	0.924
34DAP/26DAP	0.88683	0.771
51DAP/34DAP	1.01449	0.946
52DAP/51DAP	1.13346	0.616
53DAP/52DAP	0.87024	0.684
55DAP/53DAP	1.08536	1
57DAP/55DAP	0.98554	0.891
62DAP/57DAP	1.22655	0.515
68DAP/62DAP	2.09325	0.118
68DAP/14DAP	2.88751	0.019

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.96555	0.015

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	3.54589	0.058
Mature Green Tomato/Ripe Tomato	1.55043	0.015
Immature Eggplant/Mature Eggplant	0.64524	0.068
Ripe Pepper/Ripe Tomato	0.21396	0.224
Mature Eggplant/Ripe Tomato	1.46176	0.268

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	0.94799
1-3/M82	N/A	N/A
2-1-1/M82	0.50135
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	1.36111
4-1-1/M82	N/A	N/A
4-1/M82	1.18224
4-3-2/M82	0.90685
4-3/M82	N/A	N/A
5-3/M82	1.29705
6-2/M82	N/A	N/A
6-3/M82	0.92015	1
7-1/M82	N/A	N/A
7-2/M82	1.08395
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.93825	0.321
IL2-6/WTpooled	0.9676	1
IL7-5/WTpooled	1.04889	1
IL7-3/WTpooled	1.14945	1
IL12-4/WTpooled	1.06793	0.546
IL1-4/WTpooled	1.09442	1
WT/WTpooled	0.95373	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.296	0.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.89807	0.941
DC3000/delta hrp 6h	1.18693	1
DC3000/delta hrp 12h	1.06542	1
DC3000/delta hrp 24h	0.96872	0.794

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	0.94589	1
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.14455	1
Var 0h	1.09494	0.98
Var 12h I row2-row1	1.0286	0.795
Var 12h NI row2-row1	1.08186	1
Var 36h I row2-row1	1.44972	1
Var 36h NI row2-row1	1.07824	1
Var 60h I row2-row1	0.85068	0.832
Var 60h NI row2-row1	0.84322	0.818
Time course 0hI-0hNI	0.98803	0.981
Time course 12hI-12hNI	1.27443	0.181
Time course 36hI-36hNI	0.93387	0.373
Time course 60hI-60hNI	1.21825	0.042

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.12212	0.408
transgenic ySAMdc/azygous control (breaker)	0.57294	0.119
transgenic ySAMdc/azygous control (red)	0.87859	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	0.79271	0.295

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.85491	0.255

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.87156	1
Manapal/WT (break)	0.70037	0.297
Manapal/WT (red)	0.99269	1