Expression of 1-1-8.1.18.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99648 | 0.901 |
27DAP/17DAP | 0.816 | 0.442 |
39DAP/27DAP | 1.11522 | 0.804 |
41DAP/39DAP | 1.19448 | 0.676 |
42DAP/41DAP | 1.05816 | 0.962 |
43DAP/42DAP | 0.9156 | 0.813 |
47DAP/43DAP | 1.08341 | 0.715 |
52DAP/47DAP | 1.36795 | 0.438 |
57DAP/52DAP | 1.15057 | 0.946 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22498 | 0.057 |
17DAP/reference | 1.14541 | 0.143 |
27DAP/reference | 1.03596 | 0.539 |
39DAP/reference | 1.05577 | 0.186 |
41DAP/reference | 1.0532 | 0.111 |
42DAP/reference | 1.10112 | 0.055 |
43DAP/reference | 0.96975 | 0.41 |
47DAP/reference | 0.9777 | 0.418 |
52DAP/reference | 1.13835 | 0.092 |
57DAP/reference | 0.91405 | 0.019 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97465 | 0.697 |
27DAP/17DAP | 1.1044 | 0.476 |
39DAP/27DAP | 1.03092 | 0.862 |
41DAP/39DAP | 0.96479 | 0.885 |
42DAP/41DAP | 1.05162 | 0.8 |
43DAP/42DAP | 1.00525 | 1 |
47DAP/43DAP | 1.01548 | 0.92 |
52DAP/47DAP | 1.01878 | 0.939 |
57DAP/52DAP | 0.97896 | 0.745 |
57DAP/7DAP | 1.19817 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8583 | 0.108 |
17DAP/reference | 0.86925 | 0.064 |
27DAP/reference | 0.87759 | 0.013 |
39DAP/reference | 0.81424 | 0.018 |
41DAP/reference | 0.76775 | 0.025 |
42DAP/reference | 0.67371 | 0.016 |
43DAP/reference | 0.76867 | 0.012 |
47DAP/reference | 0.82262 | 0.057 |
52DAP/reference | 0.69427 | 0.011 |
57DAP/reference | 0.76518 | 0.008 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17756 | 0.43 |
17DAP/reference | 1.18608 | 0.081 |
27DAP/reference | 1.1534 | 0.053 |
39DAP/reference | 1.22257 | 0.085 |
41DAP/reference | 1.13532 | 0.262 |
42DAP/reference | 1.11883 | 0.476 |
43DAP/reference | 1.43428 | 0.012 |
47DAP/reference | 1.11617 | 0.084 |
52DAP/reference | 1.33527 | 0.006 |
57DAP/reference | 1.38732 | 0.015 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92379 | 0.169 |
17DAP/reference | 0.96889 | 0.615 |
27DAP/reference | 0.84057 | 0.085 |
39DAP/reference | 0.82507 | 0.024 |
41DAP/reference | 0.88922 | 0.07 |
42DAP/reference | 0.90084 | 0.108 |
43DAP/reference | 0.94931 | 0.449 |
47DAP/reference | 1.06383 | 0.519 |
52DAP/reference | 1.07259 | 0.908 |
57DAP/reference | 0.69001 | 0.018 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.98303 | 1 |
26DAP/20DAP | 1.08747 | 0.663 |
34DAP/26DAP | 1.04422 | 1 |
51DAP/34DAP | 1.07274 | 0.581 |
52DAP/51DAP | 1.00307 | 1 |
53DAP/52DAP | 1.12036 | 0.428 |
55DAP/53DAP | 1.07646 | 0.589 |
57DAP/55DAP | 0.89774 | 0.556 |
62DAP/57DAP | 1.08986 | 1 |
68DAP/62DAP | 0.64966 | 0.166 |
68DAP/14DAP | 1.02851 | 0.85 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.34969 | 0.03 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.21216 | 0.059 |
Mature Green Tomato/Ripe Tomato | 0.93283 | 0.569 |
Immature Eggplant/Mature Eggplant | 2.92198 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.03687 | 1 |
Mature Eggplant/Ripe Tomato | 0.95808 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.04649 | 1 |
1-1-2/M82 | 1.01147 | 1 |
12-2/M82 | 1.04656 | 1 |
12-4/M82 | 1.21911 | 0.655 |
1-3/M82 | 0.9237 | 0.501 |
2-1-1/M82 | 1.0859 | 1 |
2-1/M82 | 0.72776 | |
2-6/M82 | 1.1341 | 0.695 |
3-2/M82 | 0.95659 | |
4-1-1/M82 | 0.97649 | 1 |
4-1/M82 | 1.03585 | 1 |
4-3-2/M82 | 1.0287 | 0.508 |
4-3/M82 | 1.02764 | 1 |
5-3/M82 | 0.89924 | 0.49 |
6-2/M82 | 0.95319 | 1 |
6-3/M82 | 1.01186 | 1 |
7-1/M82 | 0.98482 | 1 |
7-2/M82 | 0.9645 | 1 |
9-3-2/M82 | 1.00836 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.07384 | 1 |
IL2-6/WTpooled | 0.7988 | 0.383 |
IL7-5/WTpooled | 0.61361 | 1 |
IL7-3/WTpooled | 1.02171 | 1 |
IL12-4/WTpooled | 1.15741 | 0.673 |
IL1-4/WTpooled | 0.93903 | 1 |
WT/WTpooled | 1.09757 | 0.777 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.85873 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.92663 | 1 |
DC3000/delta hrp 6h | 1.0191 | 1 |
DC3000/delta hrp 12h | 1.25168 | 1 |
DC3000/delta hrp 24h | 1.05668 | 0.62 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.75869 | 0.057 |
DC3000 delta B/DC3000 delta AB | 0.7474 | 0.026 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.9566 | 1 |
Exp 36h | 2.35956 | 0.489 |
Exp 60h | 1.80197 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01296 | 1 |
Var 0h | 1.07277 | 1 |
Var 12h I row2-row1 | 0.96551 | 0.856 |
Var 12h NI row2-row1 | 1.07378 | 1 |
Var 36h I row2-row1 | 0.96224 | 1 |
Var 36h NI row2-row1 | 1.11132 | 1 |
Var 60h I row2-row1 | 1.12452 | 0.562 |
Var 60h NI row2-row1 | 0.99005 | 1 |
Time course 0hI-0hNI | 1.02875 | 0.867 |
Time course 12hI-12hNI | 1.03135 | 0.785 |
Time course 36hI-36hNI | 0.94905 | 0.317 |
Time course 60hI-60hNI | 0.36943 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.01183 | 0.699 |
transgenic ySAMdc/azygous control (breaker) | 1.0872 | 1 |
transgenic ySAMdc/azygous control (red) | 0.95257 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.93499 | 0.156 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.81904 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.7679 | 0.172 |
Manapal/WT (break) | 0.93238 | 1 |
Manapal/WT (red) | 0.79323 | 0.183 |
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