Expression of 1-1-8.1.18.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.996480.901
27DAP/17DAP0.8160.442
39DAP/27DAP1.115220.804
41DAP/39DAP1.194480.676
42DAP/41DAP1.058160.962
43DAP/42DAP0.91560.813
47DAP/43DAP1.083410.715
52DAP/47DAP1.367950.438
57DAP/52DAP1.150570.946

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.224980.057
17DAP/reference1.145410.143
27DAP/reference1.035960.539
39DAP/reference1.055770.186
41DAP/reference1.05320.111
42DAP/reference1.101120.055
43DAP/reference0.969750.41
47DAP/reference0.97770.418
52DAP/reference1.138350.092
57DAP/reference0.914050.019

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.974650.697
27DAP/17DAP1.10440.476
39DAP/27DAP1.030920.862
41DAP/39DAP0.964790.885
42DAP/41DAP1.051620.8
43DAP/42DAP1.005251
47DAP/43DAP1.015480.92
52DAP/47DAP1.018780.939
57DAP/52DAP0.978960.745
57DAP/7DAP1.198170.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.85830.108
17DAP/reference0.869250.064
27DAP/reference0.877590.013
39DAP/reference0.814240.018
41DAP/reference0.767750.025
42DAP/reference0.673710.016
43DAP/reference0.768670.012
47DAP/reference0.822620.057
52DAP/reference0.694270.011
57DAP/reference0.765180.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.177560.43
17DAP/reference1.186080.081
27DAP/reference1.15340.053
39DAP/reference1.222570.085
41DAP/reference1.135320.262
42DAP/reference1.118830.476
43DAP/reference1.434280.012
47DAP/reference1.116170.084
52DAP/reference1.335270.006
57DAP/reference1.387320.015

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.923790.169
17DAP/reference0.968890.615
27DAP/reference0.840570.085
39DAP/reference0.825070.024
41DAP/reference0.889220.07
42DAP/reference0.900840.108
43DAP/reference0.949310.449
47DAP/reference1.063830.519
52DAP/reference1.072590.908
57DAP/reference0.690010.018

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.983031
26DAP/20DAP1.087470.663
34DAP/26DAP1.044221
51DAP/34DAP1.072740.581
52DAP/51DAP1.003071
53DAP/52DAP1.120360.428
55DAP/53DAP1.076460.589
57DAP/55DAP0.897740.556
62DAP/57DAP1.089861
68DAP/62DAP0.649660.166
68DAP/14DAP1.028510.85

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.349690.03

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.212160.059
Mature Green Tomato/Ripe Tomato0.932830.569
Immature Eggplant/Mature Eggplant2.921980.05
Ripe Pepper/Ripe Tomato1.036871
Mature Eggplant/Ripe Tomato0.958081

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.046491
1-1-2/M821.011471
12-2/M821.046561
12-4/M821.219110.655
1-3/M820.92370.501
2-1-1/M821.08591
2-1/M820.72776
2-6/M821.13410.695
3-2/M820.95659
4-1-1/M820.976491
4-1/M821.035851
4-3-2/M821.02870.508
4-3/M821.027641
5-3/M820.899240.49
6-2/M820.953191
6-3/M821.011861
7-1/M820.984821
7-2/M820.96451
9-3-2/M821.008361

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.073841
IL2-6/WTpooled0.79880.383
IL7-5/WTpooled0.613611
IL7-3/WTpooled1.021711
IL12-4/WTpooled1.157410.673
IL1-4/WTpooled0.939031
WT/WTpooled1.097570.777

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.858730.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.926631
DC3000/delta hrp 6h1.01911
DC3000/delta hrp 12h1.251681
DC3000/delta hrp 24h1.056680.62

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.758690.057
DC3000 delta B/DC3000 delta AB0.74740.026

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.95661
Exp 36h2.359560.489
Exp 60h1.801970.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.012961
Var 0h1.072771
Var 12h I row2-row10.965510.856
Var 12h NI row2-row11.073781
Var 36h I row2-row10.962241
Var 36h NI row2-row11.111321
Var 60h I row2-row11.124520.562
Var 60h NI row2-row10.990051
Time course 0hI-0hNI1.028750.867
Time course 12hI-12hNI1.031350.785
Time course 36hI-36hNI0.949050.317
Time course 60hI-60hNI0.369430.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.011830.699
transgenic ySAMdc/azygous control (breaker)1.08721
transgenic ySAMdc/azygous control (red)0.952571

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.934990.156

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.819040.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.76790.172
Manapal/WT (break)0.932381
Manapal/WT (red)0.793230.183