Expression of 1-1-8.1.18.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.68690.115
27DAP/17DAP0.893270.764
39DAP/27DAP1.257260.603
41DAP/39DAP0.726880.166
42DAP/41DAP0.535320.259
43DAP/42DAP0.896270.815
47DAP/43DAP0.968460.859
52DAP/47DAP1.551640.518
57DAP/52DAP0.948010.919

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.054050.872
17DAP/reference1.394740.068
27DAP/reference1.163510.258
39DAP/reference1.326390.076
41DAP/reference1.362810.015
42DAP/reference1.113420.523
43DAP/reference1.346260.04
47DAP/reference1.253580.052
52DAP/reference1.236950.092
57DAP/reference1.142020.239

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.148770.736
27DAP/17DAP1.057941
39DAP/27DAP0.957010.784
41DAP/39DAP0.920990.764
42DAP/41DAP1.156510.436
43DAP/42DAP0.834530.308
47DAP/43DAP1.067440.772
52DAP/47DAP1.49160.11
57DAP/52DAP1.084790.726
57DAP/7DAP1.063191

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.104460.344
17DAP/reference1.129810.134
27DAP/reference0.899390.037
39DAP/reference0.980960.474
41DAP/reference0.944650.326
42DAP/reference1.080150.233
43DAP/reference1.033611
47DAP/reference1.068290.901
52DAP/reference1.079070.286
57DAP/reference1.277940.023

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.174460.582
17DAP/reference1.484850.009
27DAP/reference0.980780.554
39DAP/reference0.915560.298
41DAP/reference1.094930.72
42DAP/reference1.636680.476
43DAP/reference1.439190.263
47DAP/reference1.190970.133
52DAP/reference1.11990.145
57DAP/reference1.705530.15

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.92550.249
17DAP/reference1.028240.898
27DAP/reference1.019620.721
39DAP/reference1.025370.711
41DAP/reference0.965380.459
42DAP/reference1.029341
43DAP/reference0.66030.023
47DAP/reference1.223390.251
52DAP/reference0.974990.704
57DAP/reference0.67440.053

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.978451
26DAP/20DAP0.872461
34DAP/26DAP1.552030.542
51DAP/34DAP1.045740.927
52DAP/51DAP2.01860.033
53DAP/52DAP0.947210.772
55DAP/53DAP1.077620.82
57DAP/55DAP1.042230.828
62DAP/57DAP1.17150.622
68DAP/62DAP0.871570.668
68DAP/14DAP0.66614

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.576910.087

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.247720.068
Mature Green Tomato/Ripe Tomato4.424950.015
Immature Eggplant/Mature Eggplant1.980790.058
Ripe Pepper/Ripe Tomato0.984651
Mature Eggplant/Ripe Tomato1.077571

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.007251
1-1-2/M820.850010.958
12-2/M821.075941
12-4/M821.127871
1-3/M820.869330.501
2-1-1/M820.751580.92
2-1/M820.981041
2-6/M821.132340.594
3-2/M820.84791
4-1-1/M820.965871
4-1/M821.24735
4-3-2/M821.02141
4-3/M820.92951
5-3/M821.034771
6-2/M820.996021
6-3/M821.091731
7-1/M821.2172
7-2/M820.989471
9-3-2/M820.959431

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.958171
DC3000/delta hrp 6h3.53794
DC3000/delta hrp 12h1.361351
DC3000/delta hrp 24h1.048610.69

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.871120.293
DC3000 delta B/DC3000 delta AB2.01210.192

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.042851
Exp 36h1.109650.943
Exp 60h1.162810.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.949451
Var 0h1.028761
Var 12h I row2-row11.071670.406
Var 12h NI row2-row10.754250.466
Var 36h I row2-row10.829021
Var 36h NI row2-row10.949870.791
Var 60h I row2-row11.044981
Var 60h NI row2-row10.881141
Time course 0hI-0hNI1.594960.764
Time course 12hI-12hNI1.037690.81
Time course 36hI-36hNI0.840530.066
Time course 60hI-60hNI1.132070.359

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.875020.315
transgenic ySAMdc/azygous control (breaker)1.020881
transgenic ySAMdc/azygous control (red)1.035361

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.989560.694

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.881171
Manapal/WT (red)0.862220.36