Expression of 1-1-8.1.18.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.6869 | 0.115 |
27DAP/17DAP | 0.89327 | 0.764 |
39DAP/27DAP | 1.25726 | 0.603 |
41DAP/39DAP | 0.72688 | 0.166 |
42DAP/41DAP | 0.53532 | 0.259 |
43DAP/42DAP | 0.89627 | 0.815 |
47DAP/43DAP | 0.96846 | 0.859 |
52DAP/47DAP | 1.55164 | 0.518 |
57DAP/52DAP | 0.94801 | 0.919 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05405 | 0.872 |
17DAP/reference | 1.39474 | 0.068 |
27DAP/reference | 1.16351 | 0.258 |
39DAP/reference | 1.32639 | 0.076 |
41DAP/reference | 1.36281 | 0.015 |
42DAP/reference | 1.11342 | 0.523 |
43DAP/reference | 1.34626 | 0.04 |
47DAP/reference | 1.25358 | 0.052 |
52DAP/reference | 1.23695 | 0.092 |
57DAP/reference | 1.14202 | 0.239 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.14877 | 0.736 |
27DAP/17DAP | 1.05794 | 1 |
39DAP/27DAP | 0.95701 | 0.784 |
41DAP/39DAP | 0.92099 | 0.764 |
42DAP/41DAP | 1.15651 | 0.436 |
43DAP/42DAP | 0.83453 | 0.308 |
47DAP/43DAP | 1.06744 | 0.772 |
52DAP/47DAP | 1.4916 | 0.11 |
57DAP/52DAP | 1.08479 | 0.726 |
57DAP/7DAP | 1.06319 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10446 | 0.344 |
17DAP/reference | 1.12981 | 0.134 |
27DAP/reference | 0.89939 | 0.037 |
39DAP/reference | 0.98096 | 0.474 |
41DAP/reference | 0.94465 | 0.326 |
42DAP/reference | 1.08015 | 0.233 |
43DAP/reference | 1.03361 | 1 |
47DAP/reference | 1.06829 | 0.901 |
52DAP/reference | 1.07907 | 0.286 |
57DAP/reference | 1.27794 | 0.023 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17446 | 0.582 |
17DAP/reference | 1.48485 | 0.009 |
27DAP/reference | 0.98078 | 0.554 |
39DAP/reference | 0.91556 | 0.298 |
41DAP/reference | 1.09493 | 0.72 |
42DAP/reference | 1.63668 | 0.476 |
43DAP/reference | 1.43919 | 0.263 |
47DAP/reference | 1.19097 | 0.133 |
52DAP/reference | 1.1199 | 0.145 |
57DAP/reference | 1.70553 | 0.15 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9255 | 0.249 |
17DAP/reference | 1.02824 | 0.898 |
27DAP/reference | 1.01962 | 0.721 |
39DAP/reference | 1.02537 | 0.711 |
41DAP/reference | 0.96538 | 0.459 |
42DAP/reference | 1.02934 | 1 |
43DAP/reference | 0.6603 | 0.023 |
47DAP/reference | 1.22339 | 0.251 |
52DAP/reference | 0.97499 | 0.704 |
57DAP/reference | 0.6744 | 0.053 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97845 | 1 |
26DAP/20DAP | 0.87246 | 1 |
34DAP/26DAP | 1.55203 | 0.542 |
51DAP/34DAP | 1.04574 | 0.927 |
52DAP/51DAP | 2.0186 | 0.033 |
53DAP/52DAP | 0.94721 | 0.772 |
55DAP/53DAP | 1.07762 | 0.82 |
57DAP/55DAP | 1.04223 | 0.828 |
62DAP/57DAP | 1.1715 | 0.622 |
68DAP/62DAP | 0.87157 | 0.668 |
68DAP/14DAP | 0.66614 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.57691 | 0.087 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.24772 | 0.068 |
Mature Green Tomato/Ripe Tomato | 4.42495 | 0.015 |
Immature Eggplant/Mature Eggplant | 1.98079 | 0.058 |
Ripe Pepper/Ripe Tomato | 0.98465 | 1 |
Mature Eggplant/Ripe Tomato | 1.07757 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.00725 | 1 |
1-1-2/M82 | 0.85001 | 0.958 |
12-2/M82 | 1.07594 | 1 |
12-4/M82 | 1.12787 | 1 |
1-3/M82 | 0.86933 | 0.501 |
2-1-1/M82 | 0.75158 | 0.92 |
2-1/M82 | 0.98104 | 1 |
2-6/M82 | 1.13234 | 0.594 |
3-2/M82 | 0.84791 | |
4-1-1/M82 | 0.96587 | 1 |
4-1/M82 | 1.24735 | |
4-3-2/M82 | 1.02141 | |
4-3/M82 | 0.9295 | 1 |
5-3/M82 | 1.03477 | 1 |
6-2/M82 | 0.99602 | 1 |
6-3/M82 | 1.09173 | 1 |
7-1/M82 | 1.2172 | |
7-2/M82 | 0.98947 | 1 |
9-3-2/M82 | 0.95943 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95817 | 1 |
DC3000/delta hrp 6h | 3.53794 | |
DC3000/delta hrp 12h | 1.36135 | 1 |
DC3000/delta hrp 24h | 1.04861 | 0.69 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.87112 | 0.293 |
DC3000 delta B/DC3000 delta AB | 2.0121 | 0.192 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.04285 | 1 |
Exp 36h | 1.10965 | 0.943 |
Exp 60h | 1.16281 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.94945 | 1 |
Var 0h | 1.02876 | 1 |
Var 12h I row2-row1 | 1.07167 | 0.406 |
Var 12h NI row2-row1 | 0.75425 | 0.466 |
Var 36h I row2-row1 | 0.82902 | 1 |
Var 36h NI row2-row1 | 0.94987 | 0.791 |
Var 60h I row2-row1 | 1.04498 | 1 |
Var 60h NI row2-row1 | 0.88114 | 1 |
Time course 0hI-0hNI | 1.59496 | 0.764 |
Time course 12hI-12hNI | 1.03769 | 0.81 |
Time course 36hI-36hNI | 0.84053 | 0.066 |
Time course 60hI-60hNI | 1.13207 | 0.359 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.87502 | 0.315 |
transgenic ySAMdc/azygous control (breaker) | 1.02088 | 1 |
transgenic ySAMdc/azygous control (red) | 1.03536 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98956 | 0.694 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.88117 | 1 |
Manapal/WT (red) | 0.86222 | 0.36 |
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