Expression of 1-1-8.1.2.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.31199 | 0.205 |
27DAP/17DAP | 0.51371 | 0.04 |
39DAP/27DAP | 0.79294 | 0.353 |
41DAP/39DAP | 0.82989 | 0.381 |
42DAP/41DAP | 0.8047 | 0.774 |
43DAP/42DAP | 1.23656 | 0.892 |
47DAP/43DAP | 0.85212 | 0.517 |
52DAP/47DAP | 1.0079 | 0.924 |
57DAP/52DAP | 0.94077 | 0.853 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98497 | 0.589 |
17DAP/reference | 1.12884 | 0.21 |
27DAP/reference | 1.07464 | 0.58 |
39DAP/reference | 0.96731 | 0.663 |
41DAP/reference | 0.81436 | 0.085 |
42DAP/reference | 1.10069 | 0.299 |
43DAP/reference | 1.07292 | 0.142 |
47DAP/reference | 0.98335 | 0.503 |
52DAP/reference | 0.94108 | 0.371 |
57DAP/reference | 1.28462 | 0.011 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.6013 | 0.036 |
27DAP/17DAP | 0.85429 | 0.446 |
39DAP/27DAP | 0.56648 | 0.029 |
41DAP/39DAP | 1.12607 | 0.59 |
42DAP/41DAP | 0.85222 | 0.079 |
43DAP/42DAP | 0.73024 | 0.022 |
47DAP/43DAP | 0.90053 | 0.098 |
52DAP/47DAP | 1.11653 | 0.624 |
57DAP/52DAP | 0.7977 | 0.125 |
57DAP/7DAP | 0.87822 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21815 | 0.227 |
17DAP/reference | 1.29546 | 0.092 |
27DAP/reference | 1.0662 | 0.664 |
39DAP/reference | 1.49851 | 0.007 |
41DAP/reference | 1.32402 | 0.029 |
42DAP/reference | 1.30412 | 0.076 |
43DAP/reference | 1.54887 | 0.035 |
47DAP/reference | 1.05112 | 0.804 |
52DAP/reference | 1.03478 | 0.781 |
57DAP/reference | 1.06297 | 0.571 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89212 | 0.083 |
17DAP/reference | 0.87322 | 0.077 |
27DAP/reference | 0.84662 | 0.087 |
39DAP/reference | 0.98347 | 0.526 |
41DAP/reference | 1.10542 | 0.459 |
42DAP/reference | 0.92809 | 0.039 |
43DAP/reference | 0.73846 | 0.02 |
47DAP/reference | 0.9452 | 0.292 |
52DAP/reference | 0.94228 | 0.407 |
57DAP/reference | 0.65523 | 0.003 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16132 | 0.408 |
17DAP/reference | 1.18713 | 0.39 |
27DAP/reference | 1.17983 | 0.248 |
39DAP/reference | 1.11248 | 0.691 |
41DAP/reference | 1.26963 | 0.089 |
42DAP/reference | 1.20153 | 0.108 |
43DAP/reference | 1.22657 | 0.179 |
47DAP/reference | 0.9932 | 0.626 |
52DAP/reference | 1.03706 | 0.99 |
57DAP/reference | 1.58661 | 0.012 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09205 | 0.586 |
26DAP/20DAP | 0.88409 | 0.512 |
34DAP/26DAP | 0.88883 | 0.539 |
51DAP/34DAP | 0.82798 | 0.171 |
52DAP/51DAP | 0.96076 | 1 |
53DAP/52DAP | 1.19333 | 0.171 |
55DAP/53DAP | 1.27237 | 0.185 |
57DAP/55DAP | 1.09778 | 0.898 |
62DAP/57DAP | 1.36235 | 0.678 |
68DAP/62DAP | 1.1086 | 0.85 |
68DAP/14DAP | 0.96574 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.72628 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.91605 | 0.058 |
Mature Green Tomato/Ripe Tomato | 4.31093 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.57504 | 0.062 |
Ripe Pepper/Ripe Tomato | 1.97569 | 1 |
Mature Eggplant/Ripe Tomato | 5.02204 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.95829 | 0.944 |
1-1-2/M82 | 0.94765 | 1 |
12-2/M82 | 0.97087 | 1 |
12-4/M82 | 1.01601 | 1 |
1-3/M82 | 1.01155 | 1 |
2-1-1/M82 | 1.0722 | 0.457 |
2-1/M82 | 0.67603 | 0.519 |
2-6/M82 | 1.01112 | 1 |
3-2/M82 | 1.06572 | 0.463 |
4-1-1/M82 | 1.21193 | 1 |
4-1/M82 | 0.71775 | 1 |
4-3-2/M82 | 1.16135 | 1 |
4-3/M82 | 1.21816 | 0.268 |
5-3/M82 | 1.26345 | 1 |
6-2/M82 | 1.09626 | 1 |
6-3/M82 | 1.11737 | 1 |
7-1/M82 | 1.01659 | 1 |
7-2/M82 | 1.08045 | 1 |
9-3-2/M82 | 1.03359 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 3.10774 | 0.277 |
IL2-6/WTpooled | 0.96583 | 1 |
IL7-5/WTpooled | 1.12524 | 0.792 |
IL7-3/WTpooled | 6.45073 | 1 |
IL12-4/WTpooled | 2.0123 | 0.523 |
IL1-4/WTpooled | 4.82215 | 0.426 |
WT/WTpooled | 0.86804 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.97471 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.84764 | 1 |
DC3000/delta hrp 6h | 0.97056 | 0.95 |
DC3000/delta hrp 12h | 1.12771 | 1 |
DC3000/delta hrp 24h | 0.92641 | 0.523 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.5783 | 0.027 |
DC3000 delta B/DC3000 delta AB | 0.47044 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.97504 | 1 |
Exp 36h | 0.92725 | 0.82 |
Exp 60h | 0.88675 | 0.586 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.92968 | 1 |
Var 0h | 0.28977 | 1 |
Var 12h I row2-row1 | 0.82338 | 0.514 |
Var 12h NI row2-row1 | 0.8704 | 0.546 |
Var 36h I row2-row1 | 0.89363 | 1 |
Var 36h NI row2-row1 | 1.03855 | 1 |
Var 60h I row2-row1 | 0.97504 | |
Var 60h NI row2-row1 | 0.99747 | 1 |
Time course 0hI-0hNI | 0.95133 | 0.791 |
Time course 12hI-12hNI | 0.96803 | 0.806 |
Time course 36hI-36hNI | 0.802 | 0.265 |
Time course 60hI-60hNI | 0.24433 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.08304 | 0.798 |
transgenic ySAMdc/azygous control (breaker) | 2.17705 | 0.172 |
transgenic ySAMdc/azygous control (red) | 1.17459 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.90768 | 0.362 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.52901 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.78434 | 0.093 |
Manapal/WT (break) | 2.95897 | 0.14 |
Manapal/WT (red) | 2.58003 | 0.15 |
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