Expression of 1-1-8.1.2.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.311990.205
27DAP/17DAP0.513710.04
39DAP/27DAP0.792940.353
41DAP/39DAP0.829890.381
42DAP/41DAP0.80470.774
43DAP/42DAP1.236560.892
47DAP/43DAP0.852120.517
52DAP/47DAP1.00790.924
57DAP/52DAP0.940770.853

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.984970.589
17DAP/reference1.128840.21
27DAP/reference1.074640.58
39DAP/reference0.967310.663
41DAP/reference0.814360.085
42DAP/reference1.100690.299
43DAP/reference1.072920.142
47DAP/reference0.983350.503
52DAP/reference0.941080.371
57DAP/reference1.284620.011

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.60130.036
27DAP/17DAP0.854290.446
39DAP/27DAP0.566480.029
41DAP/39DAP1.126070.59
42DAP/41DAP0.852220.079
43DAP/42DAP0.730240.022
47DAP/43DAP0.900530.098
52DAP/47DAP1.116530.624
57DAP/52DAP0.79770.125
57DAP/7DAP0.878221

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.218150.227
17DAP/reference1.295460.092
27DAP/reference1.06620.664
39DAP/reference1.498510.007
41DAP/reference1.324020.029
42DAP/reference1.304120.076
43DAP/reference1.548870.035
47DAP/reference1.051120.804
52DAP/reference1.034780.781
57DAP/reference1.062970.571

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.892120.083
17DAP/reference0.873220.077
27DAP/reference0.846620.087
39DAP/reference0.983470.526
41DAP/reference1.105420.459
42DAP/reference0.928090.039
43DAP/reference0.738460.02
47DAP/reference0.94520.292
52DAP/reference0.942280.407
57DAP/reference0.655230.003

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.161320.408
17DAP/reference1.187130.39
27DAP/reference1.179830.248
39DAP/reference1.112480.691
41DAP/reference1.269630.089
42DAP/reference1.201530.108
43DAP/reference1.226570.179
47DAP/reference0.99320.626
52DAP/reference1.037060.99
57DAP/reference1.586610.012

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.092050.586
26DAP/20DAP0.884090.512
34DAP/26DAP0.888830.539
51DAP/34DAP0.827980.171
52DAP/51DAP0.960761
53DAP/52DAP1.193330.171
55DAP/53DAP1.272370.185
57DAP/55DAP1.097780.898
62DAP/57DAP1.362350.678
68DAP/62DAP1.10860.85
68DAP/14DAP0.965741

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.726280.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.916050.058
Mature Green Tomato/Ripe Tomato4.310930.015
Immature Eggplant/Mature Eggplant0.575040.062
Ripe Pepper/Ripe Tomato1.975691
Mature Eggplant/Ripe Tomato5.022040.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.958290.944
1-1-2/M820.947651
12-2/M820.970871
12-4/M821.016011
1-3/M821.011551
2-1-1/M821.07220.457
2-1/M820.676030.519
2-6/M821.011121
3-2/M821.065720.463
4-1-1/M821.211931
4-1/M820.717751
4-3-2/M821.161351
4-3/M821.218160.268
5-3/M821.263451
6-2/M821.096261
6-3/M821.117371
7-1/M821.016591
7-2/M821.080451
9-3-2/M821.033591

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled3.107740.277
IL2-6/WTpooled0.965831
IL7-5/WTpooled1.125240.792
IL7-3/WTpooled6.450731
IL12-4/WTpooled2.01230.523
IL1-4/WTpooled4.822150.426
WT/WTpooled0.868041

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.974711

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.847641
DC3000/delta hrp 6h0.970560.95
DC3000/delta hrp 12h1.127711
DC3000/delta hrp 24h0.926410.523

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.57830.027
DC3000 delta B/DC3000 delta AB0.470440.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.975041
Exp 36h0.927250.82
Exp 60h0.886750.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.929681
Var 0h0.289771
Var 12h I row2-row10.823380.514
Var 12h NI row2-row10.87040.546
Var 36h I row2-row10.893631
Var 36h NI row2-row11.038551
Var 60h I row2-row10.97504
Var 60h NI row2-row10.997471
Time course 0hI-0hNI0.951330.791
Time course 12hI-12hNI0.968030.806
Time course 36hI-36hNI0.8020.265
Time course 60hI-60hNI0.244330.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.083040.798
transgenic ySAMdc/azygous control (breaker)2.177050.172
transgenic ySAMdc/azygous control (red)1.174590.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.907680.362

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.529010.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.784340.093
Manapal/WT (break)2.958970.14
Manapal/WT (red)2.580030.15