Expression of 1-1-8.1.2.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.333010.365
27DAP/17DAP1.304370.699
39DAP/27DAP1.334010.387
41DAP/39DAP0.88750.536
42DAP/41DAP0.85470.774
43DAP/42DAP1.233280.918
47DAP/43DAP1.285480.463
52DAP/47DAP1.016140.856
57DAP/52DAP1.180880.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.144150.265
17DAP/reference0.740850.012
27DAP/reference0.929210.349
39DAP/reference0.852550.124
41DAP/reference0.808250.154
42DAP/reference1.220430.182
43DAP/reference0.966780.631
47DAP/reference1.050610.509
52DAP/reference1.205580.167
57DAP/reference1.207470.132

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.079010.536
27DAP/17DAP0.962250.854
39DAP/27DAP1.012840.862
41DAP/39DAP1.159510.753
42DAP/41DAP0.881350.298
43DAP/42DAP0.986370.875
47DAP/43DAP0.970440.823
52DAP/47DAP1.006950.986
57DAP/52DAP0.817440.205
57DAP/7DAP0.559161

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.40660.048
17DAP/reference1.081490.399
27DAP/reference1.154550.088
39DAP/reference1.353630.021
41DAP/reference1.25830.08
42DAP/reference1.377120.012
43DAP/reference1.375170.007
47DAP/reference1.409830.042
52DAP/reference1.194470.13
57DAP/reference1.278270.012

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.889020.296
17DAP/reference1.15740.789
27DAP/reference1.329210.136
39DAP/reference1.355360.073
41DAP/reference1.385260.074
42DAP/reference1.112780.433
43DAP/reference0.86460.224
47DAP/reference0.851620.126
52DAP/reference1.138450.393
57DAP/reference0.747740.035

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.098880.602
17DAP/reference0.997160.778
27DAP/reference0.935960.27
39DAP/reference1.083250.169
41DAP/reference1.071370.588
42DAP/reference1.243840.287
43DAP/reference1.427170.148
47DAP/reference1.179990.48
52DAP/reference1.099820.575
57DAP/reference1.981210.025

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.140390.966
26DAP/20DAP0.736510.512
34DAP/26DAP0.912710.783
51DAP/34DAP0.914990.571
52DAP/51DAP0.749590.151
53DAP/52DAP1.74980.113
55DAP/53DAP0.945630.663
57DAP/55DAP1.081511
62DAP/57DAP0.722480.002
68DAP/62DAP2.150910.392
68DAP/14DAP1.869210.024

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.769240.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.771520.23
Mature Green Tomato/Ripe Tomato1.294050.017
Immature Eggplant/Mature Eggplant0.782880.075
Ripe Pepper/Ripe Tomato0.659950.224
Mature Eggplant/Ripe Tomato0.657491

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.986590.961
1-1-2/M820.741271
12-2/M820.849960.955
12-4/M821.165030.694
1-3/M821.430410.26
2-1-1/M820.844450.683
2-1/M820.754980.322
2-6/M821.003541
3-2/M821.05549
4-1-1/M821.256941
4-1/M821.082361
4-3-2/M821.293680.508
4-3/M821.587561
5-3/M821.084551
6-2/M821.144391
6-3/M820.846851
7-1/M821.210390.741
7-2/M821.204550.302
9-3-2/M821.200031

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.974521
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.045671
IL12-4/WTpooled1.015111
IL1-4/WTpooled1.12262
WT/WTpooled0.961691

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.075341

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.984711
DC3000/delta hrp 6h1.038511
DC3000/delta hrp 12h1.172321
DC3000/delta hrp 24h1.056110.516

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.7494
DC3000 delta B/DC3000 delta AB1.24090.353

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.339011
Exp 36h1.014191
Exp 60h1.193070.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.214050.421
Var 12h I row2-row10.932080.856
Var 12h NI row2-row11.069041
Var 36h I row2-row10.957821
Var 36h NI row2-row11.03261
Var 60h I row2-row10.926510.832
Var 60h NI row2-row11.095530.904
Time course 0hI-0hNI1.099280.852
Time course 12hI-12hNI0.940290.82
Time course 36hI-36hNI0.991440.753
Time course 60hI-60hNI1.452110.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.894990.454
transgenic ySAMdc/azygous control (breaker)0.942361
transgenic ySAMdc/azygous control (red)0.974171

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.952190.471

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.866420.35

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.309170.105
Manapal/WT (break)0.924191
Manapal/WT (red)1.343460.222