Expression of 1-1-8.1.2.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.33301 | 0.365 |
27DAP/17DAP | 1.30437 | 0.699 |
39DAP/27DAP | 1.33401 | 0.387 |
41DAP/39DAP | 0.8875 | 0.536 |
42DAP/41DAP | 0.8547 | 0.774 |
43DAP/42DAP | 1.23328 | 0.918 |
47DAP/43DAP | 1.28548 | 0.463 |
52DAP/47DAP | 1.01614 | 0.856 |
57DAP/52DAP | 1.18088 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14415 | 0.265 |
17DAP/reference | 0.74085 | 0.012 |
27DAP/reference | 0.92921 | 0.349 |
39DAP/reference | 0.85255 | 0.124 |
41DAP/reference | 0.80825 | 0.154 |
42DAP/reference | 1.22043 | 0.182 |
43DAP/reference | 0.96678 | 0.631 |
47DAP/reference | 1.05061 | 0.509 |
52DAP/reference | 1.20558 | 0.167 |
57DAP/reference | 1.20747 | 0.132 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07901 | 0.536 |
27DAP/17DAP | 0.96225 | 0.854 |
39DAP/27DAP | 1.01284 | 0.862 |
41DAP/39DAP | 1.15951 | 0.753 |
42DAP/41DAP | 0.88135 | 0.298 |
43DAP/42DAP | 0.98637 | 0.875 |
47DAP/43DAP | 0.97044 | 0.823 |
52DAP/47DAP | 1.00695 | 0.986 |
57DAP/52DAP | 0.81744 | 0.205 |
57DAP/7DAP | 0.55916 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.4066 | 0.048 |
17DAP/reference | 1.08149 | 0.399 |
27DAP/reference | 1.15455 | 0.088 |
39DAP/reference | 1.35363 | 0.021 |
41DAP/reference | 1.2583 | 0.08 |
42DAP/reference | 1.37712 | 0.012 |
43DAP/reference | 1.37517 | 0.007 |
47DAP/reference | 1.40983 | 0.042 |
52DAP/reference | 1.19447 | 0.13 |
57DAP/reference | 1.27827 | 0.012 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88902 | 0.296 |
17DAP/reference | 1.1574 | 0.789 |
27DAP/reference | 1.32921 | 0.136 |
39DAP/reference | 1.35536 | 0.073 |
41DAP/reference | 1.38526 | 0.074 |
42DAP/reference | 1.11278 | 0.433 |
43DAP/reference | 0.8646 | 0.224 |
47DAP/reference | 0.85162 | 0.126 |
52DAP/reference | 1.13845 | 0.393 |
57DAP/reference | 0.74774 | 0.035 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09888 | 0.602 |
17DAP/reference | 0.99716 | 0.778 |
27DAP/reference | 0.93596 | 0.27 |
39DAP/reference | 1.08325 | 0.169 |
41DAP/reference | 1.07137 | 0.588 |
42DAP/reference | 1.24384 | 0.287 |
43DAP/reference | 1.42717 | 0.148 |
47DAP/reference | 1.17999 | 0.48 |
52DAP/reference | 1.09982 | 0.575 |
57DAP/reference | 1.98121 | 0.025 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.14039 | 0.966 |
26DAP/20DAP | 0.73651 | 0.512 |
34DAP/26DAP | 0.91271 | 0.783 |
51DAP/34DAP | 0.91499 | 0.571 |
52DAP/51DAP | 0.74959 | 0.151 |
53DAP/52DAP | 1.7498 | 0.113 |
55DAP/53DAP | 0.94563 | 0.663 |
57DAP/55DAP | 1.08151 | 1 |
62DAP/57DAP | 0.72248 | 0.002 |
68DAP/62DAP | 2.15091 | 0.392 |
68DAP/14DAP | 1.86921 | 0.024 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.76924 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.77152 | 0.23 |
Mature Green Tomato/Ripe Tomato | 1.29405 | 0.017 |
Immature Eggplant/Mature Eggplant | 0.78288 | 0.075 |
Ripe Pepper/Ripe Tomato | 0.65995 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.65749 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.98659 | 0.961 |
1-1-2/M82 | 0.74127 | 1 |
12-2/M82 | 0.84996 | 0.955 |
12-4/M82 | 1.16503 | 0.694 |
1-3/M82 | 1.43041 | 0.26 |
2-1-1/M82 | 0.84445 | 0.683 |
2-1/M82 | 0.75498 | 0.322 |
2-6/M82 | 1.00354 | 1 |
3-2/M82 | 1.05549 | |
4-1-1/M82 | 1.25694 | 1 |
4-1/M82 | 1.08236 | 1 |
4-3-2/M82 | 1.29368 | 0.508 |
4-3/M82 | 1.58756 | 1 |
5-3/M82 | 1.08455 | 1 |
6-2/M82 | 1.14439 | 1 |
6-3/M82 | 0.84685 | 1 |
7-1/M82 | 1.21039 | 0.741 |
7-2/M82 | 1.20455 | 0.302 |
9-3-2/M82 | 1.20003 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.97452 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.04567 | 1 |
IL12-4/WTpooled | 1.01511 | 1 |
IL1-4/WTpooled | 1.12262 | |
WT/WTpooled | 0.96169 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.07534 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98471 | 1 |
DC3000/delta hrp 6h | 1.03851 | 1 |
DC3000/delta hrp 12h | 1.17232 | 1 |
DC3000/delta hrp 24h | 1.05611 | 0.516 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.7494 | |
DC3000 delta B/DC3000 delta AB | 1.2409 | 0.353 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.33901 | 1 |
Exp 36h | 1.01419 | 1 |
Exp 60h | 1.19307 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.21405 | 0.421 |
Var 12h I row2-row1 | 0.93208 | 0.856 |
Var 12h NI row2-row1 | 1.06904 | 1 |
Var 36h I row2-row1 | 0.95782 | 1 |
Var 36h NI row2-row1 | 1.0326 | 1 |
Var 60h I row2-row1 | 0.92651 | 0.832 |
Var 60h NI row2-row1 | 1.09553 | 0.904 |
Time course 0hI-0hNI | 1.09928 | 0.852 |
Time course 12hI-12hNI | 0.94029 | 0.82 |
Time course 36hI-36hNI | 0.99144 | 0.753 |
Time course 60hI-60hNI | 1.45211 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.89499 | 0.454 |
transgenic ySAMdc/azygous control (breaker) | 0.94236 | 1 |
transgenic ySAMdc/azygous control (red) | 0.97417 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95219 | 0.471 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.86642 | 0.35 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.30917 | 0.105 |
Manapal/WT (break) | 0.92419 | 1 |
Manapal/WT (red) | 1.34346 | 0.222 |
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