Expression of 1-1-8.1.20.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.118460.904
27DAP/17DAP1.066460.922
39DAP/27DAP0.852530.544
41DAP/39DAP1.17030.575
42DAP/41DAP1.251190.82
43DAP/42DAP1.092811
47DAP/43DAP0.921750.746
52DAP/47DAP1.025910.823
57DAP/52DAP1.143030.927

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.933690.277
17DAP/reference1.044670.412
27DAP/reference1.034710.721
39DAP/reference1.018560.706
41DAP/reference1.08270.759
42DAP/reference0.934480.032
43DAP/reference0.996630.904
47DAP/reference1.010930.773
52DAP/reference0.742330.055
57DAP/reference0.801620.044

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.081791
27DAP/17DAP0.991760.943
39DAP/27DAP0.952310.712
41DAP/39DAP0.975970.885
42DAP/41DAP1.1540.601
43DAP/42DAP1.044170.788
47DAP/43DAP1.072480.948
52DAP/47DAP1.12830.586
57DAP/52DAP0.719040.264
57DAP/7DAP1.377781

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.308120.05
17DAP/reference1.172930.092
27DAP/reference1.216110.026
39DAP/reference1.13710.252
41DAP/reference1.112340.066
42DAP/reference1.103090.308
43DAP/reference1.069440.148
47DAP/reference0.863020.101
52DAP/reference1.213420.014
57DAP/reference1.199440.029

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.979410.72
17DAP/reference0.929950.086
27DAP/reference0.852180.093
39DAP/reference0.976880.428
41DAP/reference0.887060.083
42DAP/reference1.025931
43DAP/reference0.893380.114
47DAP/reference0.959740.113
52DAP/reference1.026580.882
57DAP/reference0.955470.298

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.046410.775
17DAP/reference1.013681
27DAP/reference1.014190.834
39DAP/reference1.045610.65
41DAP/reference0.953280.148
42DAP/reference0.921110.172
43DAP/reference0.951870.398
47DAP/reference0.987660.574
52DAP/reference1.01850.941
57DAP/reference0.746840.023

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.016920.966
26DAP/20DAP0.852071
34DAP/26DAP1.13541
51DAP/34DAP0.814750.36
52DAP/51DAP1.320150.349
53DAP/52DAP0.966760.862
55DAP/53DAP1.315950.566
57DAP/55DAP1.469390.51
62DAP/57DAP1.246980.723
68DAP/62DAP1.262960.539
68DAP/14DAP1.041321

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.09450.072

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.874890.063
Mature Green Tomato/Ripe Tomato1.23663
Immature Eggplant/Mature Eggplant1.074890.379
Ripe Pepper/Ripe Tomato0.794960.293
Mature Eggplant/Ripe Tomato1.219581

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.158550.877
1-1-2/M820.957371
12-2/M820.972611
12-4/M821.066161
1-3/M820.92360.441
2-1-1/M821.027161
2-1/M821.164121
2-6/M821.057630.594
3-2/M820.85184
4-1-1/M820.956981
4-1/M820.94351
4-3-2/M820.8198
4-3/M820.855751
5-3/M820.937320.447
6-2/M821.107281
6-3/M820.991651
7-1/M820.992861
7-2/M820.978251
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.840460.321
IL2-6/WTpooled0.687751
IL7-5/WTpooled1.195990.792
IL7-3/WTpooled0.74995
IL12-4/WTpooled1.238150.367
IL1-4/WTpooled1.092711
WT/WTpooled1.013821

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.931241
DC3000/delta hrp 6h1.043991
DC3000/delta hrp 12h1.150011
DC3000/delta hrp 24h1.025630.69

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.953071
Exp 36h1.000571
Exp 60h0.930370.664

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row11.094720.544
Var 12h NI row2-row10.646140.308
Var 36h I row2-row10.834150.575
Var 36h NI row2-row11.964271
Var 60h I row2-row10.962931
Var 60h NI row2-row11.60347
Time course 0hI-0hNI0.436710.367
Time course 12hI-12hNI1.084510.756
Time course 36hI-36hNI1.84655
Time course 60hI-60hNI0.860940.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.978150.722
transgenic ySAMdc/azygous control (breaker)1.019471
transgenic ySAMdc/azygous control (red)1.018470.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.989820.673

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.019371

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.82260.172
Manapal/WT (break)0.846081
Manapal/WT (red)1.568730.15