Expression of 1-1-8.1.20.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11846 | 0.904 |
27DAP/17DAP | 1.06646 | 0.922 |
39DAP/27DAP | 0.85253 | 0.544 |
41DAP/39DAP | 1.1703 | 0.575 |
42DAP/41DAP | 1.25119 | 0.82 |
43DAP/42DAP | 1.09281 | 1 |
47DAP/43DAP | 0.92175 | 0.746 |
52DAP/47DAP | 1.02591 | 0.823 |
57DAP/52DAP | 1.14303 | 0.927 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93369 | 0.277 |
17DAP/reference | 1.04467 | 0.412 |
27DAP/reference | 1.03471 | 0.721 |
39DAP/reference | 1.01856 | 0.706 |
41DAP/reference | 1.0827 | 0.759 |
42DAP/reference | 0.93448 | 0.032 |
43DAP/reference | 0.99663 | 0.904 |
47DAP/reference | 1.01093 | 0.773 |
52DAP/reference | 0.74233 | 0.055 |
57DAP/reference | 0.80162 | 0.044 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08179 | 1 |
27DAP/17DAP | 0.99176 | 0.943 |
39DAP/27DAP | 0.95231 | 0.712 |
41DAP/39DAP | 0.97597 | 0.885 |
42DAP/41DAP | 1.154 | 0.601 |
43DAP/42DAP | 1.04417 | 0.788 |
47DAP/43DAP | 1.07248 | 0.948 |
52DAP/47DAP | 1.1283 | 0.586 |
57DAP/52DAP | 0.71904 | 0.264 |
57DAP/7DAP | 1.37778 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.30812 | 0.05 |
17DAP/reference | 1.17293 | 0.092 |
27DAP/reference | 1.21611 | 0.026 |
39DAP/reference | 1.1371 | 0.252 |
41DAP/reference | 1.11234 | 0.066 |
42DAP/reference | 1.10309 | 0.308 |
43DAP/reference | 1.06944 | 0.148 |
47DAP/reference | 0.86302 | 0.101 |
52DAP/reference | 1.21342 | 0.014 |
57DAP/reference | 1.19944 | 0.029 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97941 | 0.72 |
17DAP/reference | 0.92995 | 0.086 |
27DAP/reference | 0.85218 | 0.093 |
39DAP/reference | 0.97688 | 0.428 |
41DAP/reference | 0.88706 | 0.083 |
42DAP/reference | 1.02593 | 1 |
43DAP/reference | 0.89338 | 0.114 |
47DAP/reference | 0.95974 | 0.113 |
52DAP/reference | 1.02658 | 0.882 |
57DAP/reference | 0.95547 | 0.298 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04641 | 0.775 |
17DAP/reference | 1.01368 | 1 |
27DAP/reference | 1.01419 | 0.834 |
39DAP/reference | 1.04561 | 0.65 |
41DAP/reference | 0.95328 | 0.148 |
42DAP/reference | 0.92111 | 0.172 |
43DAP/reference | 0.95187 | 0.398 |
47DAP/reference | 0.98766 | 0.574 |
52DAP/reference | 1.0185 | 0.941 |
57DAP/reference | 0.74684 | 0.023 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01692 | 0.966 |
26DAP/20DAP | 0.85207 | 1 |
34DAP/26DAP | 1.1354 | 1 |
51DAP/34DAP | 0.81475 | 0.36 |
52DAP/51DAP | 1.32015 | 0.349 |
53DAP/52DAP | 0.96676 | 0.862 |
55DAP/53DAP | 1.31595 | 0.566 |
57DAP/55DAP | 1.46939 | 0.51 |
62DAP/57DAP | 1.24698 | 0.723 |
68DAP/62DAP | 1.26296 | 0.539 |
68DAP/14DAP | 1.04132 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.0945 | 0.072 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.87489 | 0.063 |
Mature Green Tomato/Ripe Tomato | 1.23663 | |
Immature Eggplant/Mature Eggplant | 1.07489 | 0.379 |
Ripe Pepper/Ripe Tomato | 0.79496 | 0.293 |
Mature Eggplant/Ripe Tomato | 1.21958 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.15855 | 0.877 |
1-1-2/M82 | 0.95737 | 1 |
12-2/M82 | 0.97261 | 1 |
12-4/M82 | 1.06616 | 1 |
1-3/M82 | 0.9236 | 0.441 |
2-1-1/M82 | 1.02716 | 1 |
2-1/M82 | 1.16412 | 1 |
2-6/M82 | 1.05763 | 0.594 |
3-2/M82 | 0.85184 | |
4-1-1/M82 | 0.95698 | 1 |
4-1/M82 | 0.94351 | |
4-3-2/M82 | 0.8198 | |
4-3/M82 | 0.85575 | 1 |
5-3/M82 | 0.93732 | 0.447 |
6-2/M82 | 1.10728 | 1 |
6-3/M82 | 0.99165 | 1 |
7-1/M82 | 0.99286 | 1 |
7-2/M82 | 0.97825 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.84046 | 0.321 |
IL2-6/WTpooled | 0.68775 | 1 |
IL7-5/WTpooled | 1.19599 | 0.792 |
IL7-3/WTpooled | 0.74995 | |
IL12-4/WTpooled | 1.23815 | 0.367 |
IL1-4/WTpooled | 1.09271 | 1 |
WT/WTpooled | 1.01382 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93124 | 1 |
DC3000/delta hrp 6h | 1.04399 | 1 |
DC3000/delta hrp 12h | 1.15001 | 1 |
DC3000/delta hrp 24h | 1.02563 | 0.69 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.95307 | 1 |
Exp 36h | 1.00057 | 1 |
Exp 60h | 0.93037 | 0.664 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.09472 | 0.544 |
Var 12h NI row2-row1 | 0.64614 | 0.308 |
Var 36h I row2-row1 | 0.83415 | 0.575 |
Var 36h NI row2-row1 | 1.96427 | 1 |
Var 60h I row2-row1 | 0.96293 | 1 |
Var 60h NI row2-row1 | 1.60347 | |
Time course 0hI-0hNI | 0.43671 | 0.367 |
Time course 12hI-12hNI | 1.08451 | 0.756 |
Time course 36hI-36hNI | 1.84655 | |
Time course 60hI-60hNI | 0.86094 | 0.646 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.97815 | 0.722 |
transgenic ySAMdc/azygous control (breaker) | 1.01947 | 1 |
transgenic ySAMdc/azygous control (red) | 1.01847 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98982 | 0.673 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.01937 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.8226 | 0.172 |
Manapal/WT (break) | 0.84608 | 1 |
Manapal/WT (red) | 1.56873 | 0.15 |
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