Expression of 1-1-8.1.20.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.110590.739
27DAP/17DAP0.959990.758
39DAP/27DAP1.325840.566
41DAP/39DAP1.648550.23
42DAP/41DAP0.705610.774
43DAP/42DAP1.159831
47DAP/43DAP1.520940.497
52DAP/47DAP0.969550.777
57DAP/52DAP1.117430.996

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.769090.052
17DAP/reference0.787820.021
27DAP/reference0.968810.694
39DAP/reference1.6685
41DAP/reference2.168710.48
42DAP/reference0.842010.124
43DAP/referenceN/AN/A
47DAP/reference0.896470.06
52DAP/reference0.54268
57DAP/reference0.49874

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.708740.05
27DAP/17DAP1.637480.852
39DAP/27DAP1.187121
41DAP/39DAP1.217410.753
42DAP/41DAP0.778290.162
43DAP/42DAP1.431430.664
47DAP/43DAP0.884340.701
52DAP/47DAP0.887060.66
57DAP/52DAP1.379530.793
57DAP/7DAP2.692120.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.926130.326
17DAP/reference1.070690.688
27DAP/reference0.961370.375
39DAP/reference0.923250.307
41DAP/reference0.870220.098
42DAP/reference0.963450.415
43DAP/reference0.973340.385
47DAP/reference0.876380.168
52DAP/reference0.959310.332
57DAP/reference1.075290.654

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.080190.812
17DAP/reference0.953760.434
27DAP/reference1.077720.573
39DAP/reference1.433570.602
41DAP/reference1.07570.72
42DAP/reference0.974580.482
43DAP/reference0.964990.527
47DAP/reference0.939280.261
52DAP/reference1.053190.498
57DAP/reference1.235340.286

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.889220.104
17DAP/reference0.936240.477
27DAP/reference0.797910.174
39DAP/reference0.847520.111
41DAP/reference1.117020.205
42DAP/reference0.857890.108
43DAP/reference1.00430.738
47DAP/reference0.924480.296
52DAP/reference0.916140.405
57DAP/reference0.803890.084

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.14361
26DAP/20DAP0.78590.244
34DAP/26DAP1.078241
51DAP/34DAP1.102730.746
52DAP/51DAP1.626170.503
53DAP/52DAP1.047860.978
55DAP/53DAP1.390390.671
57DAP/55DAP1.237580.944
62DAP/57DAP1.354390.35
68DAP/62DAP1.433910.305
68DAP/14DAP2.187890.061

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.323151

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.739960.226
Mature Green Tomato/Ripe Tomato1.08595
Immature Eggplant/Mature Eggplant0.82091
Ripe Pepper/Ripe Tomato0.781710.293
Mature Eggplant/Ripe Tomato0.30780.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M820.3756
12-4/M821.28331
1-3/M82N/AN/A
2-1-1/M821.011781
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M820.63858
4-3-2/M82N/AN/A
4-3/M820.968281
5-3/M821.221531
6-2/M82N/AN/A
6-3/M820.918911
7-1/M82N/AN/A
7-2/M820.69154
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.151380.277
IL2-6/WTpooled0.870691
IL7-5/WTpooled0.946791
IL7-3/WTpooled1.243131
IL12-4/WTpooled1.382140.557
IL1-4/WTpooled1.175791
WT/WTpooled1.049841

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.06511

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.597640.894
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.134791
DC3000/delta hrp 24h0.922830.607

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.04658
DC3000 delta B/DC3000 delta AB1.060320.51

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.983621
Exp 36hN/AN/A
Exp 60h1.061371

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.260351
Var 0hN/AN/A
Var 12h I row2-row10.857510.654
Var 12h NI row2-row10.362261
Var 36h I row2-row11.001411
Var 36h NI row2-row11.019480.791
Var 60h I row2-row10.61836
Var 60h NI row2-row11.866461
Time course 0hI-0hNI0.898360.612
Time course 12hI-12hNI0.772650.776
Time course 36hI-36hNI0.928290.426
Time course 60hI-60hNI1.109791

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.177040.3
transgenic ySAMdc/azygous control (breaker)0.636550.139
transgenic ySAMdc/azygous control (red)0.868751

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.97720.789

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.759330.172
Manapal/WT (break)0.991721
Manapal/WT (red)0.895740.181