Expression of 1-1-8.1.20.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11059 | 0.739 |
27DAP/17DAP | 0.95999 | 0.758 |
39DAP/27DAP | 1.32584 | 0.566 |
41DAP/39DAP | 1.64855 | 0.23 |
42DAP/41DAP | 0.70561 | 0.774 |
43DAP/42DAP | 1.15983 | 1 |
47DAP/43DAP | 1.52094 | 0.497 |
52DAP/47DAP | 0.96955 | 0.777 |
57DAP/52DAP | 1.11743 | 0.996 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76909 | 0.052 |
17DAP/reference | 0.78782 | 0.021 |
27DAP/reference | 0.96881 | 0.694 |
39DAP/reference | 1.6685 | |
41DAP/reference | 2.16871 | 0.48 |
42DAP/reference | 0.84201 | 0.124 |
43DAP/reference | N/A | N/A |
47DAP/reference | 0.89647 | 0.06 |
52DAP/reference | 0.54268 | |
57DAP/reference | 0.49874 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.70874 | 0.05 |
27DAP/17DAP | 1.63748 | 0.852 |
39DAP/27DAP | 1.18712 | 1 |
41DAP/39DAP | 1.21741 | 0.753 |
42DAP/41DAP | 0.77829 | 0.162 |
43DAP/42DAP | 1.43143 | 0.664 |
47DAP/43DAP | 0.88434 | 0.701 |
52DAP/47DAP | 0.88706 | 0.66 |
57DAP/52DAP | 1.37953 | 0.793 |
57DAP/7DAP | 2.69212 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92613 | 0.326 |
17DAP/reference | 1.07069 | 0.688 |
27DAP/reference | 0.96137 | 0.375 |
39DAP/reference | 0.92325 | 0.307 |
41DAP/reference | 0.87022 | 0.098 |
42DAP/reference | 0.96345 | 0.415 |
43DAP/reference | 0.97334 | 0.385 |
47DAP/reference | 0.87638 | 0.168 |
52DAP/reference | 0.95931 | 0.332 |
57DAP/reference | 1.07529 | 0.654 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08019 | 0.812 |
17DAP/reference | 0.95376 | 0.434 |
27DAP/reference | 1.07772 | 0.573 |
39DAP/reference | 1.43357 | 0.602 |
41DAP/reference | 1.0757 | 0.72 |
42DAP/reference | 0.97458 | 0.482 |
43DAP/reference | 0.96499 | 0.527 |
47DAP/reference | 0.93928 | 0.261 |
52DAP/reference | 1.05319 | 0.498 |
57DAP/reference | 1.23534 | 0.286 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88922 | 0.104 |
17DAP/reference | 0.93624 | 0.477 |
27DAP/reference | 0.79791 | 0.174 |
39DAP/reference | 0.84752 | 0.111 |
41DAP/reference | 1.11702 | 0.205 |
42DAP/reference | 0.85789 | 0.108 |
43DAP/reference | 1.0043 | 0.738 |
47DAP/reference | 0.92448 | 0.296 |
52DAP/reference | 0.91614 | 0.405 |
57DAP/reference | 0.80389 | 0.084 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.1436 | 1 |
26DAP/20DAP | 0.7859 | 0.244 |
34DAP/26DAP | 1.07824 | 1 |
51DAP/34DAP | 1.10273 | 0.746 |
52DAP/51DAP | 1.62617 | 0.503 |
53DAP/52DAP | 1.04786 | 0.978 |
55DAP/53DAP | 1.39039 | 0.671 |
57DAP/55DAP | 1.23758 | 0.944 |
62DAP/57DAP | 1.35439 | 0.35 |
68DAP/62DAP | 1.43391 | 0.305 |
68DAP/14DAP | 2.18789 | 0.061 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.32315 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.73996 | 0.226 |
Mature Green Tomato/Ripe Tomato | 1.08595 | |
Immature Eggplant/Mature Eggplant | 0.82091 | |
Ripe Pepper/Ripe Tomato | 0.78171 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.3078 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | 0.3756 | |
12-4/M82 | 1.2833 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.01178 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.63858 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.96828 | 1 |
5-3/M82 | 1.22153 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.91891 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.69154 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.15138 | 0.277 |
IL2-6/WTpooled | 0.87069 | 1 |
IL7-5/WTpooled | 0.94679 | 1 |
IL7-3/WTpooled | 1.24313 | 1 |
IL12-4/WTpooled | 1.38214 | 0.557 |
IL1-4/WTpooled | 1.17579 | 1 |
WT/WTpooled | 1.04984 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.0651 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.59764 | 0.894 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.13479 | 1 |
DC3000/delta hrp 24h | 0.92283 | 0.607 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.04658 | |
DC3000 delta B/DC3000 delta AB | 1.06032 | 0.51 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.98362 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 1.06137 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.26035 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 0.85751 | 0.654 |
Var 12h NI row2-row1 | 0.36226 | 1 |
Var 36h I row2-row1 | 1.00141 | 1 |
Var 36h NI row2-row1 | 1.01948 | 0.791 |
Var 60h I row2-row1 | 0.61836 | |
Var 60h NI row2-row1 | 1.86646 | 1 |
Time course 0hI-0hNI | 0.89836 | 0.612 |
Time course 12hI-12hNI | 0.77265 | 0.776 |
Time course 36hI-36hNI | 0.92829 | 0.426 |
Time course 60hI-60hNI | 1.10979 | 1 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.17704 | 0.3 |
transgenic ySAMdc/azygous control (breaker) | 0.63655 | 0.139 |
transgenic ySAMdc/azygous control (red) | 0.86875 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.9772 | 0.789 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.75933 | 0.172 |
Manapal/WT (break) | 0.99172 | 1 |
Manapal/WT (red) | 0.89574 | 0.181 |
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