Tomato Functional Genomics Database (TFGD)

Expression of 1-1-8.1.20.6

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.15528	0.602
27DAP/17DAP	1.18545	0.847
39DAP/27DAP	1.03369	0.857
41DAP/39DAP	0.86573	0.533
42DAP/41DAP	0.69087	0.397
43DAP/42DAP	1.01209	0.94
47DAP/43DAP	1.36658	0.332
52DAP/47DAP	1.17865	0.707
57DAP/52DAP	1.03698	1

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.00089	0.806
17DAP/reference	1.03911	0.306
27DAP/reference	0.99607	0.847
39DAP/reference	1.03635	0.747
41DAP/reference	1.16501	0.158
42DAP/reference	0.94244	0.134
43DAP/reference	0.9611	0.555
47DAP/reference	0.97125	0.322
52DAP/reference	0.7684	0.017
57DAP/reference	0.91189	0.138

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.9191	0.542
27DAP/17DAP	1.10572	0.988
39DAP/27DAP	1.11714	0.57
41DAP/39DAP	1.31676	0.69
42DAP/41DAP	1.04233	0.924
43DAP/42DAP	0.96862	0.729
47DAP/43DAP	0.88539	0.617
52DAP/47DAP	0.99945	0.969
57DAP/52DAP	0.90243	0.391
57DAP/7DAP	1.43423	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.95795	0.361
17DAP/reference	1.09902	0.477
27DAP/reference	1.02223	0.8
39DAP/reference	0.88088	0.146
41DAP/reference	0.91193	0.127
42DAP/reference	0.87864	0.211
43DAP/reference	0.96874	0.421
47DAP/reference	0.90768	0.293
52DAP/reference	1.06	0.563
57DAP/reference	1.04975	0.907

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.04117	0.687
17DAP/reference	0.93286	0.337
27DAP/reference	0.84002	0.155
39DAP/reference	0.92106	0.281
41DAP/reference	0.8944	0.16
42DAP/reference	0.88375	0.098
43DAP/reference	0.9891	0.657
47DAP/reference	0.99579	0.714
52DAP/reference	1.02606	1
57DAP/reference	1.2744	0.119

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.98262	0.607
17DAP/reference	1.05099	0.865
27DAP/reference	0.92843	0.23
39DAP/reference	0.8916	0.122
41DAP/reference	0.98858	0.682
42DAP/reference	0.92861	0.361
43DAP/reference	0.93137	0.384
47DAP/reference	0.93624	0.315
52DAP/reference	0.98898	0.763
57DAP/reference	0.70712	0.018

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.52314	0.878
26DAP/20DAP	0.66442	0.317
34DAP/26DAP	1.14977	1
51DAP/34DAP	1.10964	0.869
52DAP/51DAP	1.05376	1
53DAP/52DAP	0.85852	0.484
55DAP/53DAP	1.15764	0.798
57DAP/55DAP	1.17218	0.854
62DAP/57DAP	1.17033	0.569
68DAP/62DAP	0.88073	0.641
68DAP/14DAP	1.01453	0.958

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.01388	0.774

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	0.89164	0.491
Mature Green Tomato/Ripe Tomato	1.11774	0.399
Immature Eggplant/Mature Eggplant	1.68165	0.05
Ripe Pepper/Ripe Tomato	0.89151	0.293
Mature Eggplant/Ripe Tomato	12	0.373

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	1.14906	0.877
1-1-2/M82	0.83928	0.804
12-2/M82	1.14993
12-4/M82	1.17022	1
1-3/M82	0.89624	1
2-1-1/M82	0.72202	0.92
2-1/M82	N/A	N/A
2-6/M82	0.70795
3-2/M82	0.9359
4-1-1/M82	0.63235
4-1/M82	1.46032
4-3-2/M82	0.91059	1
4-3/M82	0.64566
5-3/M82	1.42224	0.467
6-2/M82	1.10232	0.253
6-3/M82	0.98453	1
7-1/M82	1.61527
7-2/M82	0.80019	0.796
9-3-2/M82	1.04828

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.02817	1
IL2-6/WTpooled	0.99608	1
IL7-5/WTpooled	0.78428	1
IL7-3/WTpooled	0.90825	1
IL12-4/WTpooled	1.21557	0.538
IL1-4/WTpooled	1.21914	1
WT/WTpooled	0.94575	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.97144	1
DC3000/delta hrp 6h	0.98226	0.95
DC3000/delta hrp 12h	1.02238	1
DC3000/delta hrp 24h	1.17215	0.099

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	1.22622	1
Exp 36h	2.22665	0.409
Exp 60h	1.76951	0.206

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	0.94955	1
Var 0h	N/A	N/A
Var 12h I row2-row1	1.31702	0.506
Var 12h NI row2-row1	1.43829	0.649
Var 36h I row2-row1	1.19717	0.601
Var 36h NI row2-row1	0.99867	1
Var 60h I row2-row1	0.81078	0.582
Var 60h NI row2-row1	0.93943	1
Time course 0hI-0hNI	1.1738	0.662
Time course 12hI-12hNI	4.41786	0.004
Time course 36hI-36hNI	5.11329	0.005
Time course 60hI-60hNI	22.7633	0.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.91994	0.286
transgenic ySAMdc/azygous control (breaker)	0.97551	1
transgenic ySAMdc/azygous control (red)	0.91144	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.12674	0.273

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.94284	0.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	1.0651	1
Manapal/WT (red)	0.72081	0.503