Expression of 1-1-8.1.3.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02692 | 0.938 |
27DAP/17DAP | 0.7883 | 0.35 |
39DAP/27DAP | 1.0105 | 0.733 |
41DAP/39DAP | 1.18125 | 0.753 |
42DAP/41DAP | 0.81868 | 0.774 |
43DAP/42DAP | 1.02385 | 0.937 |
47DAP/43DAP | 0.86135 | 0.565 |
52DAP/47DAP | 1.20626 | 0.791 |
57DAP/52DAP | 1.13328 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06427 | 0.662 |
17DAP/reference | 0.72052 | 0.021 |
27DAP/reference | 0.77814 | 0.014 |
39DAP/reference | 0.68657 | 0.012 |
41DAP/reference | 0.67694 | 0.008 |
42DAP/reference | 0.96354 | 0.176 |
43DAP/reference | 0.6241 | |
47DAP/reference | 0.84341 | 0.003 |
52DAP/reference | 0.76847 | 0.015 |
57DAP/reference | 0.70344 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04 | 1 |
27DAP/17DAP | 0.91272 | 0.614 |
39DAP/27DAP | 0.97104 | 0.812 |
41DAP/39DAP | 1.12747 | 0.79 |
42DAP/41DAP | 1.16635 | 0.872 |
43DAP/42DAP | 1.0489 | 1 |
47DAP/43DAP | 1.02262 | 1 |
52DAP/47DAP | 4.21479 | 0.224 |
57DAP/52DAP | 0.89902 | 0.337 |
57DAP/7DAP | 0.87439 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8962 | 0.168 |
17DAP/reference | 0.88343 | 0.094 |
27DAP/reference | 0.94028 | 0.146 |
39DAP/reference | 0.75345 | 0.023 |
41DAP/reference | 0.81184 | 0.043 |
42DAP/reference | 0.76814 | 0.023 |
43DAP/reference | 0.83268 | 0.046 |
47DAP/reference | 0.92516 | 0.504 |
52DAP/reference | 0.7663 | 0.019 |
57DAP/reference | 0.74038 | 0.017 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16382 | 0.246 |
17DAP/reference | 1.11686 | 0.104 |
27DAP/reference | 1.14213 | 0.244 |
39DAP/reference | 0.99554 | 0.642 |
41DAP/reference | 1.06927 | 0.491 |
42DAP/reference | 1.09866 | 0.267 |
43DAP/reference | 1.10213 | 0.704 |
47DAP/reference | 0.96493 | 0.446 |
52DAP/reference | 0.92347 | 0.239 |
57DAP/reference | 0.96627 | 0.433 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01837 | 0.709 |
17DAP/reference | 0.96623 | 0.579 |
27DAP/reference | 0.87782 | 0.133 |
39DAP/reference | 0.85097 | 0.092 |
41DAP/reference | 0.87158 | 0.119 |
42DAP/reference | 0.97363 | 0.671 |
43DAP/reference | 0.96095 | 0.484 |
47DAP/reference | 0.93298 | 0.296 |
52DAP/reference | 1.07657 | 0.526 |
57DAP/reference | 1.55496 | 0.013 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.13465 | 0.966 |
26DAP/20DAP | 0.87242 | 0.512 |
34DAP/26DAP | 0.79179 | 0.311 |
51DAP/34DAP | 1.03388 | 0.978 |
52DAP/51DAP | 1.09612 | 0.596 |
53DAP/52DAP | 0.93581 | 0.783 |
55DAP/53DAP | 1.13517 | 0.415 |
57DAP/55DAP | 1.021 | 1 |
62DAP/57DAP | 1.53561 | 0.303 |
68DAP/62DAP | 1.2114 | 0.729 |
68DAP/14DAP | 1.44356 | 0.103 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.77345 | 0.137 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.91965 | 0.517 |
Mature Green Tomato/Ripe Tomato | 1.58426 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.81335 | 0.096 |
Ripe Pepper/Ripe Tomato | 1.37557 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.1693 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.07465 | 0.742 |
1-1-2/M82 | 0.96755 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.00705 | 1 |
1-3/M82 | 0.84864 | 0.378 |
2-1-1/M82 | 1.10025 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.9226 | 0.501 |
3-2/M82 | 1.01559 | |
4-1-1/M82 | 0.9026 | 1 |
4-1/M82 | 0.54277 | |
4-3-2/M82 | 1.06028 | |
4-3/M82 | 0.81521 | 0.72 |
5-3/M82 | 0.90531 | 1 |
6-2/M82 | 0.95146 | 1 |
6-3/M82 | 0.94692 | 1 |
7-1/M82 | 1.19455 | |
7-2/M82 | 0.92315 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.88185 | 0.321 |
IL2-6/WTpooled | 1.04682 | 0.659 |
IL7-5/WTpooled | 0.91547 | 1 |
IL7-3/WTpooled | 0.83316 | 0.418 |
IL12-4/WTpooled | 0.88525 | 1 |
IL1-4/WTpooled | 0.88992 | 0.699 |
WT/WTpooled | 1.03205 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.75138 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.90574 | 1 |
DC3000/delta hrp 6h | 1.06052 | 1 |
DC3000/delta hrp 12h | 1.00418 | 1 |
DC3000/delta hrp 24h | 0.78709 | 0.055 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.5569 | 0.023 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.12081 | 1 |
Exp 36h | 1.13496 | 1 |
Exp 60h | 1.24538 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97577 | 1 |
Var 0h | 1.13624 | 0.782 |
Var 12h I row2-row1 | 0.78793 | 0.418 |
Var 12h NI row2-row1 | 0.89511 | 0.546 |
Var 36h I row2-row1 | 0.91194 | 1 |
Var 36h NI row2-row1 | 1.09869 | 1 |
Var 60h I row2-row1 | 1.11857 | 0.523 |
Var 60h NI row2-row1 | 1.03091 | 0.904 |
Time course 0hI-0hNI | 0.94321 | 0.618 |
Time course 12hI-12hNI | 0.96568 | 0.6 |
Time course 36hI-36hNI | 0.83638 | 0.023 |
Time course 60hI-60hNI | 0.20416 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.23644 | 0.272 |
transgenic ySAMdc/azygous control (breaker) | 0.9122 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.12539 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04875 | 0.119 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.07937 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.7299 | 0.088 |
Manapal/WT (break) | 1.07421 | 0.381 |
Manapal/WT (red) | 1.26569 | 0.15 |
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