Expression of 1-1-8.1.3.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89205 | 0.445 |
27DAP/17DAP | 0.91081 | 0.764 |
39DAP/27DAP | 1.68268 | 0.144 |
41DAP/39DAP | 1.47818 | 0.153 |
42DAP/41DAP | 0.88355 | 0.774 |
43DAP/42DAP | 0.83642 | 0.454 |
47DAP/43DAP | 0.78387 | 0.369 |
52DAP/47DAP | 0.91717 | 0.742 |
57DAP/52DAP | 1.01183 | 0.988 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.29343 | 0.023 |
17DAP/reference | 0.68825 | 0.321 |
27DAP/reference | 0.93665 | 0.538 |
39DAP/reference | 1.01908 | 0.504 |
41DAP/reference | 1.02794 | 0.393 |
42DAP/reference | 1.31915 | 0.004 |
43DAP/reference | 0.99464 | 0.924 |
47DAP/reference | 1.06196 | 0.764 |
52DAP/reference | 1.10426 | 0.476 |
57DAP/reference | 0.73231 | 0.294 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98432 | 0.716 |
27DAP/17DAP | 0.91931 | 0.508 |
39DAP/27DAP | 1.05623 | 0.615 |
41DAP/39DAP | 0.91133 | 0.219 |
42DAP/41DAP | 1.0019 | 0.932 |
43DAP/42DAP | 0.99838 | 1 |
47DAP/43DAP | 1.01656 | 0.914 |
52DAP/47DAP | 0.9831 | 0.902 |
57DAP/52DAP | 0.97874 | 0.685 |
57DAP/7DAP | 1.07844 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0068 | 1 |
17DAP/reference | 0.97273 | 0.144 |
27DAP/reference | 0.97297 | 0.325 |
39DAP/reference | 0.96125 | 0.095 |
41DAP/reference | 0.87427 | 0.02 |
42DAP/reference | 0.97836 | 0.482 |
43DAP/reference | 1.0323 | 0.537 |
47DAP/reference | 1.43705 | 0.027 |
52DAP/reference | 0.92469 | 0.083 |
57DAP/reference | 0.88443 | 0.011 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.34483 | 0.049 |
17DAP/reference | 1.36251 | 0.011 |
27DAP/reference | 1.45336 | 0.018 |
39DAP/reference | 1.1916 | 0.188 |
41DAP/reference | 1.27308 | 0.084 |
42DAP/reference | 1.2131 | 0.166 |
43DAP/reference | 1.26292 | 0.069 |
47DAP/reference | 1.15588 | 0.112 |
52DAP/reference | 1.30713 | 0.006 |
57DAP/reference | 1.38032 | 0.017 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01288 | 0.809 |
17DAP/reference | 1.04093 | 0.641 |
27DAP/reference | 0.97323 | 0.195 |
39DAP/reference | 1.00477 | 0.889 |
41DAP/reference | 0.94585 | 0.167 |
42DAP/reference | 0.94746 | 0.361 |
43DAP/reference | 1.00947 | 1 |
47DAP/reference | 0.98896 | 0.61 |
52DAP/reference | 0.87682 | 0.174 |
57DAP/reference | 0.81932 | 0.087 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.02404 | 1 |
26DAP/20DAP | 1.03489 | 0.953 |
34DAP/26DAP | 1.00207 | 1 |
51DAP/34DAP | 1.43579 | 0.044 |
52DAP/51DAP | 0.89363 | 0.151 |
53DAP/52DAP | 1.08727 | 0.723 |
55DAP/53DAP | 0.9769 | 0.796 |
57DAP/55DAP | 0.91165 | 0.606 |
62DAP/57DAP | 1.29839 | 0.004 |
68DAP/62DAP | 0.73567 | 0.29 |
68DAP/14DAP | 1.15241 | 0.146 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.36825 | 0.055 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.53378 | 0.108 |
Mature Green Tomato/Ripe Tomato | 1.25606 | 0.04 |
Immature Eggplant/Mature Eggplant | 1.40818 | 0.055 |
Ripe Pepper/Ripe Tomato | 2.67922 | 0.256 |
Mature Eggplant/Ripe Tomato | 1.15313 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.09721 | |
1-1-2/M82 | 0.8816 | 1 |
12-2/M82 | 1.09196 | 1 |
12-4/M82 | 1.04168 | 1 |
1-3/M82 | 0.95668 | 1 |
2-1-1/M82 | 1.10739 | 0.457 |
2-1/M82 | 1.08313 | 1 |
2-6/M82 | 1.12933 | 0.594 |
3-2/M82 | 0.91422 | |
4-1-1/M82 | 0.92323 | 1 |
4-1/M82 | 0.98631 | 1 |
4-3-2/M82 | 0.9488 | 1 |
4-3/M82 | 1.13753 | 1 |
5-3/M82 | 1.07255 | 1 |
6-2/M82 | 1.11481 | 1 |
6-3/M82 | 1.007 | 1 |
7-1/M82 | 0.98485 | 1 |
7-2/M82 | 0.99152 | 1 |
9-3-2/M82 | 0.84501 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.05311 | 1 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.98041 | |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.85722 | |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.1147 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9369 | 1 |
DC3000/delta hrp 6h | 1.01457 | 1 |
DC3000/delta hrp 12h | 1.30706 | 1 |
DC3000/delta hrp 24h | 1.2091 | 0.067 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.38655 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.39796 | 0.087 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.92868 | 1 |
Exp 36h | 1.14491 | 1 |
Exp 60h | 1.27258 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97853 | 1 |
Var 0h | 0.92926 | 1 |
Var 12h I row2-row1 | 1.11212 | 0.242 |
Var 12h NI row2-row1 | 1.06537 | 1 |
Var 36h I row2-row1 | 1.0381 | 1 |
Var 36h NI row2-row1 | 1.01507 | 1 |
Var 60h I row2-row1 | 0.89158 | 0.439 |
Var 60h NI row2-row1 | 1.01371 | 0.904 |
Time course 0hI-0hNI | 1.0187 | 1 |
Time course 12hI-12hNI | 0.95318 | 0.436 |
Time course 36hI-36hNI | 0.93493 | 0.215 |
Time course 60hI-60hNI | 1.25989 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.89478 | 0.428 |
transgenic ySAMdc/azygous control (breaker) | 1.02791 | 1 |
transgenic ySAMdc/azygous control (red) | 1.09757 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04772 | 0.04 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.19903 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.94155 | 1 |
Manapal/WT (break) | 1.07963 | 1 |
Manapal/WT (red) | 0.70035 | 0.181 |
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