Expression of 1-1-8.1.3.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.892050.445
27DAP/17DAP0.910810.764
39DAP/27DAP1.682680.144
41DAP/39DAP1.478180.153
42DAP/41DAP0.883550.774
43DAP/42DAP0.836420.454
47DAP/43DAP0.783870.369
52DAP/47DAP0.917170.742
57DAP/52DAP1.011830.988

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.293430.023
17DAP/reference0.688250.321
27DAP/reference0.936650.538
39DAP/reference1.019080.504
41DAP/reference1.027940.393
42DAP/reference1.319150.004
43DAP/reference0.994640.924
47DAP/reference1.061960.764
52DAP/reference1.104260.476
57DAP/reference0.732310.294

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.984320.716
27DAP/17DAP0.919310.508
39DAP/27DAP1.056230.615
41DAP/39DAP0.911330.219
42DAP/41DAP1.00190.932
43DAP/42DAP0.998381
47DAP/43DAP1.016560.914
52DAP/47DAP0.98310.902
57DAP/52DAP0.978740.685
57DAP/7DAP1.078441

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.00681
17DAP/reference0.972730.144
27DAP/reference0.972970.325
39DAP/reference0.961250.095
41DAP/reference0.874270.02
42DAP/reference0.978360.482
43DAP/reference1.03230.537
47DAP/reference1.437050.027
52DAP/reference0.924690.083
57DAP/reference0.884430.011

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.344830.049
17DAP/reference1.362510.011
27DAP/reference1.453360.018
39DAP/reference1.19160.188
41DAP/reference1.273080.084
42DAP/reference1.21310.166
43DAP/reference1.262920.069
47DAP/reference1.155880.112
52DAP/reference1.307130.006
57DAP/reference1.380320.017

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.012880.809
17DAP/reference1.040930.641
27DAP/reference0.973230.195
39DAP/reference1.004770.889
41DAP/reference0.945850.167
42DAP/reference0.947460.361
43DAP/reference1.009471
47DAP/reference0.988960.61
52DAP/reference0.876820.174
57DAP/reference0.819320.087

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.024041
26DAP/20DAP1.034890.953
34DAP/26DAP1.002071
51DAP/34DAP1.435790.044
52DAP/51DAP0.893630.151
53DAP/52DAP1.087270.723
55DAP/53DAP0.97690.796
57DAP/55DAP0.911650.606
62DAP/57DAP1.298390.004
68DAP/62DAP0.735670.29
68DAP/14DAP1.152410.146

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.368250.055

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.533780.108
Mature Green Tomato/Ripe Tomato1.256060.04
Immature Eggplant/Mature Eggplant1.408180.055
Ripe Pepper/Ripe Tomato2.679220.256
Mature Eggplant/Ripe Tomato1.153131

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.09721
1-1-2/M820.88161
12-2/M821.091961
12-4/M821.041681
1-3/M820.956681
2-1-1/M821.107390.457
2-1/M821.083131
2-6/M821.129330.594
3-2/M820.91422
4-1-1/M820.923231
4-1/M820.986311
4-3-2/M820.94881
4-3/M821.137531
5-3/M821.072551
6-2/M821.114811
6-3/M821.0071
7-1/M820.984851
7-2/M820.991521
9-3-2/M820.845010.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.053111
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.98041
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.85722
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.11471

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.93691
DC3000/delta hrp 6h1.014571
DC3000/delta hrp 12h1.307061
DC3000/delta hrp 24h1.20910.067

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.386550.042
DC3000 delta B/DC3000 delta AB1.397960.087

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.928681
Exp 36h1.144911
Exp 60h1.272580.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.978531
Var 0h0.929261
Var 12h I row2-row11.112120.242
Var 12h NI row2-row11.065371
Var 36h I row2-row11.03811
Var 36h NI row2-row11.015071
Var 60h I row2-row10.891580.439
Var 60h NI row2-row11.013710.904
Time course 0hI-0hNI1.01871
Time course 12hI-12hNI0.953180.436
Time course 36hI-36hNI0.934930.215
Time course 60hI-60hNI1.259890.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.894780.428
transgenic ySAMdc/azygous control (breaker)1.027911
transgenic ySAMdc/azygous control (red)1.097570.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.047720.04

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.199030.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.941551
Manapal/WT (break)1.079631
Manapal/WT (red)0.700350.181