Expression of 1-1-8.1.3.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.089020.681
27DAP/17DAP1.221690.742
39DAP/27DAP1.216390.729
41DAP/39DAP0.914540.636
42DAP/41DAP1.146660.755
43DAP/42DAP1.270460.507
47DAP/43DAP0.89780.66
52DAP/47DAP1.250290.763
57DAP/52DAP0.861190.803

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.039020.638
17DAP/reference1.026070.907
27DAP/reference1.270320.036
39DAP/reference1.078510.359
41DAP/reference1.027270.963
42DAP/reference0.935020.268
43DAP/reference1.38109
47DAP/reference0.924930.258
52DAP/reference1.594260.009
57DAP/reference0.611720.013

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.033380.947
27DAP/17DAP1.110850.842
39DAP/27DAP1.55550.064
41DAP/39DAP0.546370.022
42DAP/41DAP1.110090.365
43DAP/42DAP1.474470.02
47DAP/43DAP0.810020.039
52DAP/47DAP1.201550.424
57DAP/52DAP1.044811
57DAP/7DAP1.179071

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.031191
17DAP/reference0.867880.253
27DAP/reference0.749530.109
39DAP/reference0.967550.474
41DAP/reference1.051580.637
42DAP/reference0.998180.641
43DAP/reference1.010340.608
47DAP/reference0.909960.504
52DAP/reference1.048691
57DAP/reference0.926990.291

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.078970.97
17DAP/reference1.214170.083
27DAP/reference1.270950.054
39DAP/reference1.409210.034
41DAP/reference1.2750.057
42DAP/reference1.271470.028
43DAP/reference0.99680.657
47DAP/reference0.911850.319
52DAP/reference1.164550.194
57DAP/reference0.963350.46

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.668990.031
17DAP/reference1.183040.436
27DAP/reference1.05760.871
39DAP/reference1.266260.275
41DAP/reference1.065010.889
42DAP/reference1.295050.818
43DAP/reference1.212690.439
47DAP/reference1.310860.055
52DAP/reference1.022491
57DAP/reference1.686250.009

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.716460.966
26DAP/20DAP1.326330.253
34DAP/26DAP1.323230.542
51DAP/34DAP1.5060.035
52DAP/51DAP0.904111
53DAP/52DAP0.969240.862
55DAP/53DAP0.593370.021
57DAP/55DAP1.090390.944
62DAP/57DAP1.382890.902
68DAP/62DAP1.28120.767
68DAP/14DAP1.332740.265

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.763060.072

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.077421
Mature Green Tomato/Ripe Tomato1.301670.814
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.0892
Mature Eggplant/Ripe Tomato0.090270.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.007791
1-1-2/M820.968491
12-2/M820.977220.955
12-4/M821.040461
1-3/M820.930730.441
2-1-1/M821.024341
2-1/M821.447781
2-6/M820.950881
3-2/M821.572820.549
4-1-1/M821.118830.977
4-1/M820.989831
4-3-2/M820.873750.698
4-3/M820.958161
5-3/M820.975811
6-2/M820.962911
6-3/M821.009131
7-1/M820.937241
7-2/M820.9250.881
9-3-2/M821.031391

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.768640.243
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.926631
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.944820.834
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.887460.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.989411
DC3000/delta hrp 6h1.14515
DC3000/delta hrp 12h1.218381
DC3000/delta hrp 24h1.146740.411

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.880010.232
DC3000 delta B/DC3000 delta AB0.811370.063

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h0.814980.749
Exp 60h1.004131

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.960431
Var 0h0.475481
Var 12h I row2-row11.005251
Var 12h NI row2-row10.901470.488
Var 36h I row2-row10.849460.805
Var 36h NI row2-row11.407731
Var 60h I row2-row10.936610.439
Var 60h NI row2-row11.294090.904
Time course 0hI-0hNI0.94750.617
Time course 12hI-12hNI0.955880.637
Time course 36hI-36hNI0.827540.029
Time course 60hI-60hNI0.415290.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.040520.339
transgenic ySAMdc/azygous control (breaker)0.821560.49
transgenic ySAMdc/azygous control (red)1.033480.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.995520.832

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.958110.284

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.875871
Manapal/WT (break)1.197790.381
Manapal/WT (red)1.091221