Expression of 1-1-8.1.3.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08902 | 0.681 |
27DAP/17DAP | 1.22169 | 0.742 |
39DAP/27DAP | 1.21639 | 0.729 |
41DAP/39DAP | 0.91454 | 0.636 |
42DAP/41DAP | 1.14666 | 0.755 |
43DAP/42DAP | 1.27046 | 0.507 |
47DAP/43DAP | 0.8978 | 0.66 |
52DAP/47DAP | 1.25029 | 0.763 |
57DAP/52DAP | 0.86119 | 0.803 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03902 | 0.638 |
17DAP/reference | 1.02607 | 0.907 |
27DAP/reference | 1.27032 | 0.036 |
39DAP/reference | 1.07851 | 0.359 |
41DAP/reference | 1.02727 | 0.963 |
42DAP/reference | 0.93502 | 0.268 |
43DAP/reference | 1.38109 | |
47DAP/reference | 0.92493 | 0.258 |
52DAP/reference | 1.59426 | 0.009 |
57DAP/reference | 0.61172 | 0.013 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03338 | 0.947 |
27DAP/17DAP | 1.11085 | 0.842 |
39DAP/27DAP | 1.5555 | 0.064 |
41DAP/39DAP | 0.54637 | 0.022 |
42DAP/41DAP | 1.11009 | 0.365 |
43DAP/42DAP | 1.47447 | 0.02 |
47DAP/43DAP | 0.81002 | 0.039 |
52DAP/47DAP | 1.20155 | 0.424 |
57DAP/52DAP | 1.04481 | 1 |
57DAP/7DAP | 1.17907 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03119 | 1 |
17DAP/reference | 0.86788 | 0.253 |
27DAP/reference | 0.74953 | 0.109 |
39DAP/reference | 0.96755 | 0.474 |
41DAP/reference | 1.05158 | 0.637 |
42DAP/reference | 0.99818 | 0.641 |
43DAP/reference | 1.01034 | 0.608 |
47DAP/reference | 0.90996 | 0.504 |
52DAP/reference | 1.04869 | 1 |
57DAP/reference | 0.92699 | 0.291 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07897 | 0.97 |
17DAP/reference | 1.21417 | 0.083 |
27DAP/reference | 1.27095 | 0.054 |
39DAP/reference | 1.40921 | 0.034 |
41DAP/reference | 1.275 | 0.057 |
42DAP/reference | 1.27147 | 0.028 |
43DAP/reference | 0.9968 | 0.657 |
47DAP/reference | 0.91185 | 0.319 |
52DAP/reference | 1.16455 | 0.194 |
57DAP/reference | 0.96335 | 0.46 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.66899 | 0.031 |
17DAP/reference | 1.18304 | 0.436 |
27DAP/reference | 1.0576 | 0.871 |
39DAP/reference | 1.26626 | 0.275 |
41DAP/reference | 1.06501 | 0.889 |
42DAP/reference | 1.29505 | 0.818 |
43DAP/reference | 1.21269 | 0.439 |
47DAP/reference | 1.31086 | 0.055 |
52DAP/reference | 1.02249 | 1 |
57DAP/reference | 1.68625 | 0.009 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.71646 | 0.966 |
26DAP/20DAP | 1.32633 | 0.253 |
34DAP/26DAP | 1.32323 | 0.542 |
51DAP/34DAP | 1.506 | 0.035 |
52DAP/51DAP | 0.90411 | 1 |
53DAP/52DAP | 0.96924 | 0.862 |
55DAP/53DAP | 0.59337 | 0.021 |
57DAP/55DAP | 1.09039 | 0.944 |
62DAP/57DAP | 1.38289 | 0.902 |
68DAP/62DAP | 1.2812 | 0.767 |
68DAP/14DAP | 1.33274 | 0.265 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.76306 | 0.072 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.07742 | 1 |
Mature Green Tomato/Ripe Tomato | 1.30167 | 0.814 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.0892 | |
Mature Eggplant/Ripe Tomato | 0.09027 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.00779 | 1 |
1-1-2/M82 | 0.96849 | 1 |
12-2/M82 | 0.97722 | 0.955 |
12-4/M82 | 1.04046 | 1 |
1-3/M82 | 0.93073 | 0.441 |
2-1-1/M82 | 1.02434 | 1 |
2-1/M82 | 1.44778 | 1 |
2-6/M82 | 0.95088 | 1 |
3-2/M82 | 1.57282 | 0.549 |
4-1-1/M82 | 1.11883 | 0.977 |
4-1/M82 | 0.98983 | 1 |
4-3-2/M82 | 0.87375 | 0.698 |
4-3/M82 | 0.95816 | 1 |
5-3/M82 | 0.97581 | 1 |
6-2/M82 | 0.96291 | 1 |
6-3/M82 | 1.00913 | 1 |
7-1/M82 | 0.93724 | 1 |
7-2/M82 | 0.925 | 0.881 |
9-3-2/M82 | 1.03139 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.76864 | 0.243 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.92663 | 1 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.94482 | 0.834 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.88746 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98941 | 1 |
DC3000/delta hrp 6h | 1.14515 | |
DC3000/delta hrp 12h | 1.21838 | 1 |
DC3000/delta hrp 24h | 1.14674 | 0.411 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.88001 | 0.232 |
DC3000 delta B/DC3000 delta AB | 0.81137 | 0.063 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 0.81498 | 0.749 |
Exp 60h | 1.00413 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96043 | 1 |
Var 0h | 0.47548 | 1 |
Var 12h I row2-row1 | 1.00525 | 1 |
Var 12h NI row2-row1 | 0.90147 | 0.488 |
Var 36h I row2-row1 | 0.84946 | 0.805 |
Var 36h NI row2-row1 | 1.40773 | 1 |
Var 60h I row2-row1 | 0.93661 | 0.439 |
Var 60h NI row2-row1 | 1.29409 | 0.904 |
Time course 0hI-0hNI | 0.9475 | 0.617 |
Time course 12hI-12hNI | 0.95588 | 0.637 |
Time course 36hI-36hNI | 0.82754 | 0.029 |
Time course 60hI-60hNI | 0.41529 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.04052 | 0.339 |
transgenic ySAMdc/azygous control (breaker) | 0.82156 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.03348 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99552 | 0.832 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.95811 | 0.284 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.87587 | 1 |
Manapal/WT (break) | 1.19779 | 0.381 |
Manapal/WT (red) | 1.09122 | 1 |
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