Expression of 1-1-8.1.4.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.953420.779
27DAP/17DAP1.027960.898
39DAP/27DAP1.136140.798
41DAP/39DAP0.894970.701
42DAP/41DAP0.793230.774
43DAP/42DAP1.159220.937
47DAP/43DAP1.607690.769
52DAP/47DAP1.093160.845
57DAP/52DAP1.197641

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.026650.9
17DAP/reference0.959510.474
27DAP/reference0.988180.725
39DAP/reference0.993190.855
41DAP/reference0.891710.085
42DAP/reference1.149810.025
43DAP/reference1.080930.142
47DAP/reference1.119680.069
52DAP/reference0.979140.546
57DAP/reference1.207560.018

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.306110.23
27DAP/17DAP0.962260.878
39DAP/27DAP1.001381
41DAP/39DAP1.049070.88
42DAP/41DAP1.110040.55
43DAP/42DAP0.974490.774
47DAP/43DAP0.948620.757
52DAP/47DAP1.092460.696
57DAP/52DAP1.230340.311
57DAP/7DAP1.108971

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.183290.104
17DAP/reference1.2270.016
27DAP/reference1.218020.013
39DAP/reference1.306470.009
41DAP/reference1.29710.038
42DAP/reference1.25640.046
43DAP/reference1.462510.014
47DAP/reference1.286050.059
52DAP/reference1.916540.008
57DAP/reference1.834670.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.145410.269
17DAP/reference1.0650.448
27DAP/reference1.003870.735
39DAP/reference1.000840.586
41DAP/reference0.870560.173
42DAP/reference1.036250.744
43DAP/reference1.031150.89
47DAP/reference1.101240.24
52DAP/reference0.935540.28
57DAP/reference1.024220.827

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.410850.018
17DAP/reference1.011591
27DAP/reference1.044290.834
39DAP/reference1.400790.342
41DAP/reference1.346190.008
42DAP/reference1.197470.114
43DAP/reference1.168280.081
47DAP/reference1.172010.63
52DAP/reference1.253360.076
57DAP/reference2.545440.039

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.011311
26DAP/20DAP1.027551
34DAP/26DAP0.951110.92
51DAP/34DAP1.430970.055
52DAP/51DAP0.931961
53DAP/52DAP1.040350.83
55DAP/53DAP0.970010.784
57DAP/55DAP0.961640.823
62DAP/57DAP1.25750.8
68DAP/62DAP0.97170.863
68DAP/14DAP1.06640.958

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.090040.782

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.826080.279
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant1.160630.096
Ripe Pepper/Ripe Tomato0.978181
Mature Eggplant/Ripe Tomato0.936441

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.080671
1-1-2/M821.151821
12-2/M821.210230.61
12-4/M821.170591
1-3/M821.008471
2-1-1/M821.280420.764
2-1/M821.29613
2-6/M821.207390.594
3-2/M820.99555
4-1-1/M820.993021
4-1/M821.48837
4-3-2/M82N/AN/A
4-3/M821.080681
5-3/M821.013861
6-2/M820.743141
6-3/M820.960281
7-1/M820.975261
7-2/M820.875480.881
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.01323
IL2-6/WTpooled0.960311
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.89567
IL12-4/WTpooled1.0308
IL1-4/WTpooled1.11244
WT/WTpooled0.858091

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.041841

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.09570.921
DC3000/delta hrp 6h1.051121
DC3000/delta hrp 12h1.250831
DC3000/delta hrp 24h0.814380.323

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.946760.955
DC3000 delta B/DC3000 delta AB1.220190.324

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.040431
Exp 36h1.23970.489
Exp 60h1.110960.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.040271
Var 0h0.769430.933
Var 12h I row2-row10.924830.77
Var 12h NI row2-row11.006881
Var 36h I row2-row11.057361
Var 36h NI row2-row10.797260.421
Var 60h I row2-row11.029481
Var 60h NI row2-row10.975891
Time course 0hI-0hNI1.102810.852
Time course 12hI-12hNI0.932140.33
Time course 36hI-36hNI0.94440.366
Time course 60hI-60hNI0.931060.319

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.977080.862
transgenic ySAMdc/azygous control (breaker)1.177420.172
transgenic ySAMdc/azygous control (red)1.024470.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.084670.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.067760.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.977971
Manapal/WT (break)0.929151
Manapal/WT (red)0.768980.181