Expression of 1-1-8.1.4.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95342 | 0.779 |
27DAP/17DAP | 1.02796 | 0.898 |
39DAP/27DAP | 1.13614 | 0.798 |
41DAP/39DAP | 0.89497 | 0.701 |
42DAP/41DAP | 0.79323 | 0.774 |
43DAP/42DAP | 1.15922 | 0.937 |
47DAP/43DAP | 1.60769 | 0.769 |
52DAP/47DAP | 1.09316 | 0.845 |
57DAP/52DAP | 1.19764 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02665 | 0.9 |
17DAP/reference | 0.95951 | 0.474 |
27DAP/reference | 0.98818 | 0.725 |
39DAP/reference | 0.99319 | 0.855 |
41DAP/reference | 0.89171 | 0.085 |
42DAP/reference | 1.14981 | 0.025 |
43DAP/reference | 1.08093 | 0.142 |
47DAP/reference | 1.11968 | 0.069 |
52DAP/reference | 0.97914 | 0.546 |
57DAP/reference | 1.20756 | 0.018 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.30611 | 0.23 |
27DAP/17DAP | 0.96226 | 0.878 |
39DAP/27DAP | 1.00138 | 1 |
41DAP/39DAP | 1.04907 | 0.88 |
42DAP/41DAP | 1.11004 | 0.55 |
43DAP/42DAP | 0.97449 | 0.774 |
47DAP/43DAP | 0.94862 | 0.757 |
52DAP/47DAP | 1.09246 | 0.696 |
57DAP/52DAP | 1.23034 | 0.311 |
57DAP/7DAP | 1.10897 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18329 | 0.104 |
17DAP/reference | 1.227 | 0.016 |
27DAP/reference | 1.21802 | 0.013 |
39DAP/reference | 1.30647 | 0.009 |
41DAP/reference | 1.2971 | 0.038 |
42DAP/reference | 1.2564 | 0.046 |
43DAP/reference | 1.46251 | 0.014 |
47DAP/reference | 1.28605 | 0.059 |
52DAP/reference | 1.91654 | 0.008 |
57DAP/reference | 1.83467 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14541 | 0.269 |
17DAP/reference | 1.065 | 0.448 |
27DAP/reference | 1.00387 | 0.735 |
39DAP/reference | 1.00084 | 0.586 |
41DAP/reference | 0.87056 | 0.173 |
42DAP/reference | 1.03625 | 0.744 |
43DAP/reference | 1.03115 | 0.89 |
47DAP/reference | 1.10124 | 0.24 |
52DAP/reference | 0.93554 | 0.28 |
57DAP/reference | 1.02422 | 0.827 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.41085 | 0.018 |
17DAP/reference | 1.01159 | 1 |
27DAP/reference | 1.04429 | 0.834 |
39DAP/reference | 1.40079 | 0.342 |
41DAP/reference | 1.34619 | 0.008 |
42DAP/reference | 1.19747 | 0.114 |
43DAP/reference | 1.16828 | 0.081 |
47DAP/reference | 1.17201 | 0.63 |
52DAP/reference | 1.25336 | 0.076 |
57DAP/reference | 2.54544 | 0.039 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01131 | 1 |
26DAP/20DAP | 1.02755 | 1 |
34DAP/26DAP | 0.95111 | 0.92 |
51DAP/34DAP | 1.43097 | 0.055 |
52DAP/51DAP | 0.93196 | 1 |
53DAP/52DAP | 1.04035 | 0.83 |
55DAP/53DAP | 0.97001 | 0.784 |
57DAP/55DAP | 0.96164 | 0.823 |
62DAP/57DAP | 1.2575 | 0.8 |
68DAP/62DAP | 0.9717 | 0.863 |
68DAP/14DAP | 1.0664 | 0.958 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.09004 | 0.782 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.82608 | 0.279 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 1.16063 | 0.096 |
Ripe Pepper/Ripe Tomato | 0.97818 | 1 |
Mature Eggplant/Ripe Tomato | 0.93644 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.08067 | 1 |
1-1-2/M82 | 1.15182 | 1 |
12-2/M82 | 1.21023 | 0.61 |
12-4/M82 | 1.17059 | 1 |
1-3/M82 | 1.00847 | 1 |
2-1-1/M82 | 1.28042 | 0.764 |
2-1/M82 | 1.29613 | |
2-6/M82 | 1.20739 | 0.594 |
3-2/M82 | 0.99555 | |
4-1-1/M82 | 0.99302 | 1 |
4-1/M82 | 1.48837 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.08068 | 1 |
5-3/M82 | 1.01386 | 1 |
6-2/M82 | 0.74314 | 1 |
6-3/M82 | 0.96028 | 1 |
7-1/M82 | 0.97526 | 1 |
7-2/M82 | 0.87548 | 0.881 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.01323 | |
IL2-6/WTpooled | 0.96031 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.89567 | |
IL12-4/WTpooled | 1.0308 | |
IL1-4/WTpooled | 1.11244 | |
WT/WTpooled | 0.85809 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.04184 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0957 | 0.921 |
DC3000/delta hrp 6h | 1.05112 | 1 |
DC3000/delta hrp 12h | 1.25083 | 1 |
DC3000/delta hrp 24h | 0.81438 | 0.323 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.94676 | 0.955 |
DC3000 delta B/DC3000 delta AB | 1.22019 | 0.324 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.04043 | 1 |
Exp 36h | 1.2397 | 0.489 |
Exp 60h | 1.11096 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04027 | 1 |
Var 0h | 0.76943 | 0.933 |
Var 12h I row2-row1 | 0.92483 | 0.77 |
Var 12h NI row2-row1 | 1.00688 | 1 |
Var 36h I row2-row1 | 1.05736 | 1 |
Var 36h NI row2-row1 | 0.79726 | 0.421 |
Var 60h I row2-row1 | 1.02948 | 1 |
Var 60h NI row2-row1 | 0.97589 | 1 |
Time course 0hI-0hNI | 1.10281 | 0.852 |
Time course 12hI-12hNI | 0.93214 | 0.33 |
Time course 36hI-36hNI | 0.9444 | 0.366 |
Time course 60hI-60hNI | 0.93106 | 0.319 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.97708 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 1.17742 | 0.172 |
transgenic ySAMdc/azygous control (red) | 1.02447 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.08467 | 0.035 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.06776 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.97797 | 1 |
Manapal/WT (break) | 0.92915 | 1 |
Manapal/WT (red) | 0.76898 | 0.181 |
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