Expression of 1-1-8.1.4.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.77825 | 0.297 |
27DAP/17DAP | 1.10324 | 1 |
39DAP/27DAP | 1.28922 | 0.412 |
41DAP/39DAP | 1.14898 | 0.88 |
42DAP/41DAP | 1.19873 | 0.672 |
43DAP/42DAP | 0.70859 | 0.495 |
47DAP/43DAP | 1.27316 | 0.459 |
52DAP/47DAP | 1.18259 | 0.906 |
57DAP/52DAP | 1.01599 | 0.996 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83221 | 0.136 |
17DAP/reference | 1.00406 | 0.858 |
27DAP/reference | 0.91075 | 0.304 |
39DAP/reference | 1.05077 | 0.664 |
41DAP/reference | 0.96986 | 0.667 |
42DAP/reference | 1.10621 | 0.287 |
43DAP/reference | 1.21492 | 0.083 |
47DAP/reference | 1.56482 | 0.001 |
52DAP/reference | 1.52942 | 0.019 |
57DAP/reference | 1.5086 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.24956 | 0.103 |
27DAP/17DAP | 0.92769 | 0.748 |
39DAP/27DAP | 0.86917 | 0.283 |
41DAP/39DAP | 0.99754 | 1 |
42DAP/41DAP | 1.00906 | 0.939 |
43DAP/42DAP | 0.98656 | 0.902 |
47DAP/43DAP | 0.97819 | 0.902 |
52DAP/47DAP | 1.01383 | 0.979 |
57DAP/52DAP | 1.44657 | 0.13 |
57DAP/7DAP | 0.94766 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18716 | 0.069 |
17DAP/reference | 1.12832 | 0.297 |
27DAP/reference | 1.08585 | 0.073 |
39DAP/reference | 1.43832 | 0.008 |
41DAP/reference | 1.2732 | 0.052 |
42DAP/reference | 1.29771 | 0.059 |
43DAP/reference | 1.49088 | 0.013 |
47DAP/reference | 1.60106 | 0.017 |
52DAP/reference | 1.63869 | 0.007 |
57DAP/reference | 1.52975 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10378 | 0.507 |
17DAP/reference | 1.04764 | 0.924 |
27DAP/reference | 1.13407 | 0.208 |
39DAP/reference | 1.25877 | 0.124 |
41DAP/reference | 1.24979 | 0.053 |
42DAP/reference | 1.00542 | 1 |
43DAP/reference | 1.1448 | 0.479 |
47DAP/reference | 1.24308 | 0.182 |
52DAP/reference | 0.88719 | 0.143 |
57DAP/reference | 0.91898 | 0.338 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07667 | 0.631 |
17DAP/reference | 0.89842 | 0.146 |
27DAP/reference | 0.98193 | 0.594 |
39DAP/reference | 1.03084 | 0.691 |
41DAP/reference | 0.84674 | 0.119 |
42DAP/reference | 1.04135 | 0.863 |
43DAP/reference | 1.16811 | 0.403 |
47DAP/reference | 1.1674 | 0.218 |
52DAP/reference | 1.3352 | 0.13 |
57DAP/reference | 1.99142 | 0.009 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0206 | 1 |
26DAP/20DAP | 1.13417 | 0.642 |
34DAP/26DAP | 1.33602 | 1 |
51DAP/34DAP | 1.18469 | 0.719 |
52DAP/51DAP | 1.1313 | 0.367 |
53DAP/52DAP | 0.99331 | 0.929 |
55DAP/53DAP | 1.06802 | 0.964 |
57DAP/55DAP | 1.02308 | 0.947 |
62DAP/57DAP | 1.33415 | 0.133 |
68DAP/62DAP | 1.37392 | 0.278 |
68DAP/14DAP | 0.91045 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.94003 | 0.358 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.62485 | 0.151 |
Mature Green Tomato/Ripe Tomato | 1.10023 | 0.814 |
Immature Eggplant/Mature Eggplant | 0.8276 | 0.159 |
Ripe Pepper/Ripe Tomato | 1.25387 | 0.258 |
Mature Eggplant/Ripe Tomato | 0.7566 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.87413 | 0.634 |
1-1-2/M82 | 0.98602 | 1 |
12-2/M82 | 0.79152 | 0.619 |
12-4/M82 | 0.78548 | 0.282 |
1-3/M82 | 1.37285 | 0.277 |
2-1-1/M82 | 1.03332 | 1 |
2-1/M82 | 0.96391 | |
2-6/M82 | 0.94586 | 1 |
3-2/M82 | 1.04299 | |
4-1-1/M82 | 0.91993 | |
4-1/M82 | 0.85097 | |
4-3-2/M82 | 1.24179 | 0.241 |
4-3/M82 | 1.57315 | 0.268 |
5-3/M82 | 1.45441 | 0.447 |
6-2/M82 | 0.91631 | 1 |
6-3/M82 | 0.93203 | 1 |
7-1/M82 | 1.08912 | 1 |
7-2/M82 | 1.16017 | 0.385 |
9-3-2/M82 | 0.81493 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.03772 | 0.584 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.94968 | 1 |
IL12-4/WTpooled | 0.92921 | 1 |
IL1-4/WTpooled | 1.07371 | |
WT/WTpooled | 1.04978 | 0.874 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.0123 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9604 | 1 |
DC3000/delta hrp 6h | 1.1771 | 0.609 |
DC3000/delta hrp 12h | 1.07142 | 1 |
DC3000/delta hrp 24h | 0.99526 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.26553 | 0.048 |
DC3000 delta B/DC3000 delta AB | 1.03924 | 0.677 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 0.89527 | 0.879 |
Exp 60h | 1.22375 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.02898 | 0.936 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.96569 | 0.348 |
transgenic ySAMdc/azygous control (breaker) | 0.89406 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.00449 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05512 | 0.261 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.79822 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.82672 | 1 |
Manapal/WT (break) | 1.1819 | 0.183 |
Manapal/WT (red) | 1.24085 | 0.413 |
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