Expression of 1-1-8.1.4.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.778250.297
27DAP/17DAP1.103241
39DAP/27DAP1.289220.412
41DAP/39DAP1.148980.88
42DAP/41DAP1.198730.672
43DAP/42DAP0.708590.495
47DAP/43DAP1.273160.459
52DAP/47DAP1.182590.906
57DAP/52DAP1.015990.996

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.832210.136
17DAP/reference1.004060.858
27DAP/reference0.910750.304
39DAP/reference1.050770.664
41DAP/reference0.969860.667
42DAP/reference1.106210.287
43DAP/reference1.214920.083
47DAP/reference1.564820.001
52DAP/reference1.529420.019
57DAP/reference1.50860.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.249560.103
27DAP/17DAP0.927690.748
39DAP/27DAP0.869170.283
41DAP/39DAP0.997541
42DAP/41DAP1.009060.939
43DAP/42DAP0.986560.902
47DAP/43DAP0.978190.902
52DAP/47DAP1.013830.979
57DAP/52DAP1.446570.13
57DAP/7DAP0.947661

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.187160.069
17DAP/reference1.128320.297
27DAP/reference1.085850.073
39DAP/reference1.438320.008
41DAP/reference1.27320.052
42DAP/reference1.297710.059
43DAP/reference1.490880.013
47DAP/reference1.601060.017
52DAP/reference1.638690.007
57DAP/reference1.529750.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.103780.507
17DAP/reference1.047640.924
27DAP/reference1.134070.208
39DAP/reference1.258770.124
41DAP/reference1.249790.053
42DAP/reference1.005421
43DAP/reference1.14480.479
47DAP/reference1.243080.182
52DAP/reference0.887190.143
57DAP/reference0.918980.338

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.076670.631
17DAP/reference0.898420.146
27DAP/reference0.981930.594
39DAP/reference1.030840.691
41DAP/reference0.846740.119
42DAP/reference1.041350.863
43DAP/reference1.168110.403
47DAP/reference1.16740.218
52DAP/reference1.33520.13
57DAP/reference1.991420.009

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.02061
26DAP/20DAP1.134170.642
34DAP/26DAP1.336021
51DAP/34DAP1.184690.719
52DAP/51DAP1.13130.367
53DAP/52DAP0.993310.929
55DAP/53DAP1.068020.964
57DAP/55DAP1.023080.947
62DAP/57DAP1.334150.133
68DAP/62DAP1.373920.278
68DAP/14DAP0.910451

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.940030.358

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.624850.151
Mature Green Tomato/Ripe Tomato1.100230.814
Immature Eggplant/Mature Eggplant0.82760.159
Ripe Pepper/Ripe Tomato1.253870.258
Mature Eggplant/Ripe Tomato0.75661

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.874130.634
1-1-2/M820.986021
12-2/M820.791520.619
12-4/M820.785480.282
1-3/M821.372850.277
2-1-1/M821.033321
2-1/M820.96391
2-6/M820.945861
3-2/M821.04299
4-1-1/M820.91993
4-1/M820.85097
4-3-2/M821.241790.241
4-3/M821.573150.268
5-3/M821.454410.447
6-2/M820.916311
6-3/M820.932031
7-1/M821.089121
7-2/M821.160170.385
9-3-2/M820.81493

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.037720.584
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.949681
IL12-4/WTpooled0.929211
IL1-4/WTpooled1.07371
WT/WTpooled1.049780.874

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.01231

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.96041
DC3000/delta hrp 6h1.17710.609
DC3000/delta hrp 12h1.071421
DC3000/delta hrp 24h0.995261

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.265530.048
DC3000 delta B/DC3000 delta AB1.039240.677

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h0.895270.879
Exp 60h1.223750.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.028980.936
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.965690.348
transgenic ySAMdc/azygous control (breaker)0.894060.49
transgenic ySAMdc/azygous control (red)1.004491

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.055120.261

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.798220.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.826721
Manapal/WT (break)1.18190.183
Manapal/WT (red)1.240850.413