Tomato Functional Genomics Database (TFGD)

Expression of 1-1-8.1.4.7

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.06979	0.838
27DAP/17DAP	1.32814	0.766
39DAP/27DAP	1.81347	0.268
41DAP/39DAP	0.99296	0.941
42DAP/41DAP	1.33359	0.825
43DAP/42DAP	0.98628	0.932
47DAP/43DAP	1.15982	0.702
52DAP/47DAP	1.16111	0.674
57DAP/52DAP	1.01047	0.983

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.96691	0.503
17DAP/reference	1.02485	0.843
27DAP/reference	1.11261	0.2
39DAP/reference	1.1024	0.311
41DAP/reference	1.06082	0.287
42DAP/reference	0.98743	0.455
43DAP/reference	1.03989	0.73
47DAP/reference	0.98596	0.503
52DAP/reference	0.91547	0.162
57DAP/reference	0.9826	0.58

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.10124	0.319
27DAP/17DAP	1.13973	0.482
39DAP/27DAP	0.96227	0.754
41DAP/39DAP	0.98836	1
42DAP/41DAP	0.99146	0.83
43DAP/42DAP	0.90472	0.157
47DAP/43DAP	0.90687	0.387
52DAP/47DAP	1.18078	0.492
57DAP/52DAP	1.15336	0.411
57DAP/7DAP	1.18544	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.23814	0.894
17DAP/reference	0.91742	0.253
27DAP/reference	0.81068	0.033
39DAP/reference	0.9018	0.17
41DAP/reference	0.98955	0.589
42DAP/reference	0.8512	0.05
43DAP/reference	0.89217	0.241
47DAP/reference	0.92557	0.504
52DAP/reference	0.78589	0.035
57DAP/reference	1.0073	0.67

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.0391	0.449
17DAP/reference	0.8985	0.279
27DAP/reference	0.92133	0.292
39DAP/reference	1.15555	0.272
41DAP/reference	1.26108	0.548
42DAP/reference	0.85983	0.05
43DAP/reference	0.92986	0.378
47DAP/reference	0.86674	0.099
52DAP/reference	0.75684	0.031
57DAP/reference	1.10343	0.626

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.79674	0.052
17DAP/reference	1.08949	0.814
27DAP/reference	0.85815	0.119
39DAP/reference	0.98863	0.755
41DAP/reference	0.7457	0.025
42DAP/reference	0.87586	0.361
43DAP/reference	0.99425	0.614
47DAP/reference	0.91248	0.207
52DAP/reference	0.94902	0.582
57DAP/reference	0.928	0.131

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.99015	1
26DAP/20DAP	2.01557	0.102
34DAP/26DAP	0.88379	0.693
51DAP/34DAP	1.26207	0.044
52DAP/51DAP	0.96541	1
53DAP/52DAP	0.93954	0.783
55DAP/53DAP	0.69259	0.21
57DAP/55DAP	1.42289	0.474
62DAP/57DAP	0.95587	0.994
68DAP/62DAP	1.12517	0.616
68DAP/14DAP	1.00329	1

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.28123	0.099

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	1.07394	0.113
Mature Green Tomato/Ripe Tomato	1.29874	0.437
Immature Eggplant/Mature Eggplant	0.85356	0.254
Ripe Pepper/Ripe Tomato	1.03985	1
Mature Eggplant/Ripe Tomato	1.15729	0.373

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	0.82345	0.616
1-1-2/M82	0.84655	0.958
12-2/M82	1.02575	1
12-4/M82	0.89209	1
1-3/M82	1.39906	0.479
2-1-1/M82	1.04778	1
2-1/M82	0.96936
2-6/M82	1.04373	0.594
3-2/M82	1.33653
4-1-1/M82	1.28425
4-1/M82	1.25627	0.853
4-3-2/M82	0.97257
4-3/M82	1.17322	1
5-3/M82	0.92937	1
6-2/M82	0.86878	0.497
6-3/M82	1.01374	1
7-1/M82	1.0507	1
7-2/M82	1.27776	0.324
9-3-2/M82	1.11749	1

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	1.11766	0.419
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	1.09715	0.362
IL12-4/WTpooled	1.05232	0.695
IL1-4/WTpooled	0.89705
WT/WTpooled	0.99989	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	0.94327	1

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.04322	0.921
DC3000/delta hrp 6h	1.08416	1
DC3000/delta hrp 12h	1.07473	1
DC3000/delta hrp 24h	0.90045	0.363

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	0.76782
DC3000 delta B/DC3000 delta AB	0.84746	0.178

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	0.70252	1
Exp 36h	1.02752	1
Exp 60h	0.93468	0.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	0.93653
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.2837	0.297
transgenic ySAMdc/azygous control (breaker)	1.12867	1
transgenic ySAMdc/azygous control (red)	1.15431	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.07342	0.273

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.72478	0.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	1.01814	1
Manapal/WT (break)	1.14143	1
Manapal/WT (red)	1.13434	0.413