Expression of 1-1-8.1.6.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.16593 | 0.798 |
27DAP/17DAP | 1.17498 | 0.804 |
39DAP/27DAP | 0.77579 | 0.222 |
41DAP/39DAP | 1.39045 | 0.37 |
42DAP/41DAP | 1.05741 | 0.978 |
43DAP/42DAP | 1.02219 | 1 |
47DAP/43DAP | 1.08155 | 0.497 |
52DAP/47DAP | 1.44625 | 0.496 |
57DAP/52DAP | 0.95936 | 0.949 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96387 | 0.489 |
17DAP/reference | 1.01258 | 1 |
27DAP/reference | 1.02202 | 0.696 |
39DAP/reference | 1.07485 | 0.497 |
41DAP/reference | 0.99716 | 1 |
42DAP/reference | 0.92267 | 0.019 |
43DAP/reference | 0.94659 | 0.429 |
47DAP/reference | 0.92325 | 0.098 |
52DAP/reference | 0.96532 | 0.427 |
57DAP/reference | 0.98484 | 0.58 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.35035 | 0.05 |
27DAP/17DAP | 1.30813 | 0.055 |
39DAP/27DAP | 0.8961 | 0.156 |
41DAP/39DAP | 0.99247 | 1 |
42DAP/41DAP | 1.13467 | 0.852 |
43DAP/42DAP | 0.38189 | 0.022 |
47DAP/43DAP | 1.20763 | 0.124 |
52DAP/47DAP | 0.99749 | 0.925 |
57DAP/52DAP | 0.70356 | 0.123 |
57DAP/7DAP | 1.11748 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.981 | 0.495 |
17DAP/reference | 0.86741 | 0.082 |
27DAP/reference | 0.85359 | 0.014 |
39DAP/reference | 0.66774 | 0.011 |
41DAP/reference | 0.75778 | 0.032 |
42DAP/reference | 0.66516 | 0.01 |
43DAP/reference | 0.65477 | 0.011 |
47DAP/reference | 0.88804 | 0.293 |
52DAP/reference | 0.58444 | 0.012 |
57DAP/reference | 0.61332 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0164 | 0.832 |
17DAP/reference | 1.01385 | 0.979 |
27DAP/reference | 0.90919 | 0.195 |
39DAP/reference | 1.03978 | 0.764 |
41DAP/reference | 0.8202 | 0.194 |
42DAP/reference | 0.91094 | 0.042 |
43DAP/reference | 1.23909 | 0.055 |
47DAP/reference | 0.98552 | 0.574 |
52DAP/reference | 1.04911 | 0.559 |
57DAP/reference | 1.15622 | 0.04 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98618 | 0.607 |
17DAP/reference | 0.96536 | 0.56 |
27DAP/reference | 0.75911 | 0.055 |
39DAP/reference | 0.69171 | 0.043 |
41DAP/reference | 0.74932 | 0.023 |
42DAP/reference | 0.74033 | 0.016 |
43DAP/reference | 0.71894 | 0.023 |
47DAP/reference | 0.96245 | 0.434 |
52DAP/reference | 0.76551 | 0.131 |
57DAP/reference | 1.90889 | 0.8 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.10405 | 0.966 |
26DAP/20DAP | 0.84385 | 0.512 |
34DAP/26DAP | 0.89961 | 0.811 |
51DAP/34DAP | 1.27948 | 0.058 |
52DAP/51DAP | 1.00733 | 1 |
53DAP/52DAP | 0.97081 | 0.848 |
55DAP/53DAP | 1.23335 | 0.434 |
57DAP/55DAP | 1.22276 | 0.559 |
62DAP/57DAP | 1.23226 | 0.723 |
68DAP/62DAP | 0.51081 | 0.195 |
68DAP/14DAP | 0.8331 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.3671 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.97092 | 0.765 |
Mature Green Tomato/Ripe Tomato | 1.57763 | 0.017 |
Immature Eggplant/Mature Eggplant | 1.04438 | 0.398 |
Ripe Pepper/Ripe Tomato | 0.89684 | 1 |
Mature Eggplant/Ripe Tomato | 3.15128 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.88737 | 0.944 |
1-1-2/M82 | 0.91851 | 1 |
12-2/M82 | 0.97432 | |
12-4/M82 | 1.14502 | 0.655 |
1-3/M82 | 0.80529 | 0.378 |
2-1-1/M82 | 1.0276 | |
2-1/M82 | 0.64209 | |
2-6/M82 | 1.07508 | 1 |
3-2/M82 | 1.07519 | |
4-1-1/M82 | 0.98448 | |
4-1/M82 | 0.99286 | |
4-3-2/M82 | 0.98113 | 1 |
4-3/M82 | 0.71975 | 0.72 |
5-3/M82 | 1.11875 | 0.572 |
6-2/M82 | 0.74347 | 1 |
6-3/M82 | 0.88951 | 0.982 |
7-1/M82 | 0.94304 | 1 |
7-2/M82 | 0.78098 | 0.796 |
9-3-2/M82 | 0.95484 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.68291 | 0.243 |
IL2-6/WTpooled | 1.03992 | 0.659 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.92579 | 1 |
IL12-4/WTpooled | 0.8596 | 0.566 |
IL1-4/WTpooled | 0.87267 | 0.834 |
WT/WTpooled | 1.07811 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.50628 | 0.875 |
DC3000/delta hrp 6h | 0.96661 | 0.95 |
DC3000/delta hrp 12h | 0.85485 | 1 |
DC3000/delta hrp 24h | 1.3435 | 0.232 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 0.89113 | 0.406 |
Exp 60h | 1.04262 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.09855 | 1 |
Var 0h | 1.02709 | 0.98 |
Var 12h I row2-row1 | 1.07742 | 0.692 |
Var 12h NI row2-row1 | 0.78191 | 0.443 |
Var 36h I row2-row1 | 0.7957 | 0.575 |
Var 36h NI row2-row1 | 1.08073 | 1 |
Var 60h I row2-row1 | 1.71852 | 0.562 |
Var 60h NI row2-row1 | 1.31357 | 0.904 |
Time course 0hI-0hNI | 1.10775 | 0.799 |
Time course 12hI-12hNI | 1.00035 | 1 |
Time course 36hI-36hNI | 0.83796 | 0.042 |
Time course 60hI-60hNI | 0.95841 | 0.646 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.76692 | 0.377 |
transgenic ySAMdc/azygous control (breaker) | 0.77752 | 0.173 |
transgenic ySAMdc/azygous control (red) | 1.06926 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00008 | 0.967 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.01718 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.80966 | 1 |
Manapal/WT (break) | 0.98743 | 1 |
Manapal/WT (red) | 0.84005 | 0.503 |
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