Expression of 1-1-8.1.6.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.165930.798
27DAP/17DAP1.174980.804
39DAP/27DAP0.775790.222
41DAP/39DAP1.390450.37
42DAP/41DAP1.057410.978
43DAP/42DAP1.022191
47DAP/43DAP1.081550.497
52DAP/47DAP1.446250.496
57DAP/52DAP0.959360.949

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.963870.489
17DAP/reference1.012581
27DAP/reference1.022020.696
39DAP/reference1.074850.497
41DAP/reference0.997161
42DAP/reference0.922670.019
43DAP/reference0.946590.429
47DAP/reference0.923250.098
52DAP/reference0.965320.427
57DAP/reference0.984840.58

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.350350.05
27DAP/17DAP1.308130.055
39DAP/27DAP0.89610.156
41DAP/39DAP0.992471
42DAP/41DAP1.134670.852
43DAP/42DAP0.381890.022
47DAP/43DAP1.207630.124
52DAP/47DAP0.997490.925
57DAP/52DAP0.703560.123
57DAP/7DAP1.117481

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.9810.495
17DAP/reference0.867410.082
27DAP/reference0.853590.014
39DAP/reference0.667740.011
41DAP/reference0.757780.032
42DAP/reference0.665160.01
43DAP/reference0.654770.011
47DAP/reference0.888040.293
52DAP/reference0.584440.012
57DAP/reference0.613320.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.01640.832
17DAP/reference1.013850.979
27DAP/reference0.909190.195
39DAP/reference1.039780.764
41DAP/reference0.82020.194
42DAP/reference0.910940.042
43DAP/reference1.239090.055
47DAP/reference0.985520.574
52DAP/reference1.049110.559
57DAP/reference1.156220.04

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.986180.607
17DAP/reference0.965360.56
27DAP/reference0.759110.055
39DAP/reference0.691710.043
41DAP/reference0.749320.023
42DAP/reference0.740330.016
43DAP/reference0.718940.023
47DAP/reference0.962450.434
52DAP/reference0.765510.131
57DAP/reference1.908890.8

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.104050.966
26DAP/20DAP0.843850.512
34DAP/26DAP0.899610.811
51DAP/34DAP1.279480.058
52DAP/51DAP1.007331
53DAP/52DAP0.970810.848
55DAP/53DAP1.233350.434
57DAP/55DAP1.222760.559
62DAP/57DAP1.232260.723
68DAP/62DAP0.510810.195
68DAP/14DAP0.83310.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.36710.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.970920.765
Mature Green Tomato/Ripe Tomato1.577630.017
Immature Eggplant/Mature Eggplant1.044380.398
Ripe Pepper/Ripe Tomato0.896841
Mature Eggplant/Ripe Tomato3.151281

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.887370.944
1-1-2/M820.918511
12-2/M820.97432
12-4/M821.145020.655
1-3/M820.805290.378
2-1-1/M821.0276
2-1/M820.64209
2-6/M821.075081
3-2/M821.07519
4-1-1/M820.98448
4-1/M820.99286
4-3-2/M820.981131
4-3/M820.719750.72
5-3/M821.118750.572
6-2/M820.743471
6-3/M820.889510.982
7-1/M820.943041
7-2/M820.780980.796
9-3-2/M820.954841

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.682910.243
IL2-6/WTpooled1.039920.659
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.925791
IL12-4/WTpooled0.85960.566
IL1-4/WTpooled0.872670.834
WT/WTpooled1.07811

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.506280.875
DC3000/delta hrp 6h0.966610.95
DC3000/delta hrp 12h0.854851
DC3000/delta hrp 24h1.34350.232

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h0.891130.406
Exp 60h1.042621

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.098551
Var 0h1.027090.98
Var 12h I row2-row11.077420.692
Var 12h NI row2-row10.781910.443
Var 36h I row2-row10.79570.575
Var 36h NI row2-row11.080731
Var 60h I row2-row11.718520.562
Var 60h NI row2-row11.313570.904
Time course 0hI-0hNI1.107750.799
Time course 12hI-12hNI1.000351
Time course 36hI-36hNI0.837960.042
Time course 60hI-60hNI0.958410.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.766920.377
transgenic ySAMdc/azygous control (breaker)0.777520.173
transgenic ySAMdc/azygous control (red)1.069260.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.000080.967

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.017181

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.809661
Manapal/WT (break)0.987431
Manapal/WT (red)0.840050.503