Expression of 1-1-8.1.6.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.21490.463
27DAP/17DAP0.9630.947
39DAP/27DAP0.88370.537
41DAP/39DAP1.214510.432
42DAP/41DAP0.925291
43DAP/42DAP1.196420.714
47DAP/43DAP1.219340.497
52DAP/47DAP1.119690.731
57DAP/52DAP1.068370.963

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.899370.238
17DAP/reference0.976420.701
27DAP/reference0.943540.457
39DAP/reference0.994140.885
41DAP/reference0.955480.434
42DAP/reference1.057360.485
43DAP/reference1.108430.495
47DAP/reference1.081160.478
52DAP/reference1.197020.354
57DAP/reference1.029320.984

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.021550.736
27DAP/17DAP0.945420.475
39DAP/27DAP1.00320.874
41DAP/39DAP1.127070.417
42DAP/41DAP0.969640.695
43DAP/42DAP1.017060.382
47DAP/43DAP0.983220.877
52DAP/47DAP0.964070.79
57DAP/52DAP1.040790.726
57DAP/7DAP1.059441

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.312660.274
17DAP/reference1.158470.134
27DAP/reference1.015911
39DAP/reference1.249840.028
41DAP/reference1.238670.336
42DAP/reference1.283070.308
43DAP/reference1.392960.037
47DAP/reference1.394540.044
52DAP/reference1.275870.171
57DAP/reference1.17750.183

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.857890.115
17DAP/reference1.021721
27DAP/reference1.063640.639
39DAP/reference0.962540.33
41DAP/reference1.001620.584
42DAP/reference1.134860.359
43DAP/reference1.063021
47DAP/reference1.196790.025
52DAP/reference0.894420.239
57DAP/reference1.110980.538

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.157790.793
17DAP/reference0.99720.855
27DAP/reference1.178920.284
39DAP/reference1.328610.05
41DAP/reference0.99570.754
42DAP/reference1.43870.117
43DAP/reference1.069731
47DAP/reference0.928370.348
52DAP/reference0.986950.8
57DAP/reference1.339170.069

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.016571
26DAP/20DAP0.94580.512
34DAP/26DAP1.074740.819
51DAP/34DAP1.019840.883
52DAP/51DAP1.010360.904
53DAP/52DAP1.033610.882
55DAP/53DAP0.94720.592
57DAP/55DAP1.188740.626
62DAP/57DAP0.39685
68DAP/62DAP1.546370.448
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.00761

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.397970.078
Mature Green Tomato/Ripe Tomato0.976830.66
Immature Eggplant/Mature Eggplant1.096920.58
Ripe Pepper/Ripe Tomato1.571171
Mature Eggplant/Ripe Tomato0.807621

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.928870.613
1-1-2/M820.99631
12-2/M820.989760.955
12-4/M820.977251
1-3/M820.980420.501
2-1-1/M821.020431
2-1/M821.150110.345
2-6/M820.931010.501
3-2/M820.98089
4-1-1/M820.941511
4-1/M821.033240.512
4-3-2/M820.955311
4-3/M821.036021
5-3/M821.023391
6-2/M821.016591
6-3/M821.022671
7-1/M820.972031
7-2/M821.018231
9-3-2/M820.898770.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.98181
IL2-6/WTpooled0.874041
IL7-5/WTpooled1.04684
IL7-3/WTpooled1.097361
IL12-4/WTpooled1.086420.546
IL1-4/WTpooled1.000991
WT/WTpooled1.058340.874

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.948231

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.103030.629
DC3000/delta hrp 6h0.785480.95
DC3000/delta hrp 12h1.069041
DC3000/delta hrp 24h1.073110.673

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.442690.121
DC3000 delta B/DC3000 delta AB1.114890.324

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.303221
Exp 36h1.402420.349
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.988611
Var 0h1.933790.936
Var 12h I row2-row11.194170.196
Var 12h NI row2-row10.989481
Var 36h I row2-row10.9891
Var 36h NI row2-row10.918780.584
Var 60h I row2-row11.473881
Var 60h NI row2-row11.074180.904
Time course 0hI-0hNI1.059870.852
Time course 12hI-12hNI1.035530.81
Time course 36hI-36hNI0.935190.323
Time course 60hI-60hNI1.381920.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.981620.315
transgenic ySAMdc/azygous control (breaker)0.991991
transgenic ySAMdc/azygous control (red)1.034870.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.943940.22

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.775730.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.073720.307
Manapal/WT (break)1.074441
Manapal/WT (red)0.95480.728