Expression of 1-1-8.1.6.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.2149 | 0.463 |
27DAP/17DAP | 0.963 | 0.947 |
39DAP/27DAP | 0.8837 | 0.537 |
41DAP/39DAP | 1.21451 | 0.432 |
42DAP/41DAP | 0.92529 | 1 |
43DAP/42DAP | 1.19642 | 0.714 |
47DAP/43DAP | 1.21934 | 0.497 |
52DAP/47DAP | 1.11969 | 0.731 |
57DAP/52DAP | 1.06837 | 0.963 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89937 | 0.238 |
17DAP/reference | 0.97642 | 0.701 |
27DAP/reference | 0.94354 | 0.457 |
39DAP/reference | 0.99414 | 0.885 |
41DAP/reference | 0.95548 | 0.434 |
42DAP/reference | 1.05736 | 0.485 |
43DAP/reference | 1.10843 | 0.495 |
47DAP/reference | 1.08116 | 0.478 |
52DAP/reference | 1.19702 | 0.354 |
57DAP/reference | 1.02932 | 0.984 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02155 | 0.736 |
27DAP/17DAP | 0.94542 | 0.475 |
39DAP/27DAP | 1.0032 | 0.874 |
41DAP/39DAP | 1.12707 | 0.417 |
42DAP/41DAP | 0.96964 | 0.695 |
43DAP/42DAP | 1.01706 | 0.382 |
47DAP/43DAP | 0.98322 | 0.877 |
52DAP/47DAP | 0.96407 | 0.79 |
57DAP/52DAP | 1.04079 | 0.726 |
57DAP/7DAP | 1.05944 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.31266 | 0.274 |
17DAP/reference | 1.15847 | 0.134 |
27DAP/reference | 1.01591 | 1 |
39DAP/reference | 1.24984 | 0.028 |
41DAP/reference | 1.23867 | 0.336 |
42DAP/reference | 1.28307 | 0.308 |
43DAP/reference | 1.39296 | 0.037 |
47DAP/reference | 1.39454 | 0.044 |
52DAP/reference | 1.27587 | 0.171 |
57DAP/reference | 1.1775 | 0.183 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85789 | 0.115 |
17DAP/reference | 1.02172 | 1 |
27DAP/reference | 1.06364 | 0.639 |
39DAP/reference | 0.96254 | 0.33 |
41DAP/reference | 1.00162 | 0.584 |
42DAP/reference | 1.13486 | 0.359 |
43DAP/reference | 1.06302 | 1 |
47DAP/reference | 1.19679 | 0.025 |
52DAP/reference | 0.89442 | 0.239 |
57DAP/reference | 1.11098 | 0.538 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15779 | 0.793 |
17DAP/reference | 0.9972 | 0.855 |
27DAP/reference | 1.17892 | 0.284 |
39DAP/reference | 1.32861 | 0.05 |
41DAP/reference | 0.9957 | 0.754 |
42DAP/reference | 1.4387 | 0.117 |
43DAP/reference | 1.06973 | 1 |
47DAP/reference | 0.92837 | 0.348 |
52DAP/reference | 0.98695 | 0.8 |
57DAP/reference | 1.33917 | 0.069 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01657 | 1 |
26DAP/20DAP | 0.9458 | 0.512 |
34DAP/26DAP | 1.07474 | 0.819 |
51DAP/34DAP | 1.01984 | 0.883 |
52DAP/51DAP | 1.01036 | 0.904 |
53DAP/52DAP | 1.03361 | 0.882 |
55DAP/53DAP | 0.9472 | 0.592 |
57DAP/55DAP | 1.18874 | 0.626 |
62DAP/57DAP | 0.39685 | |
68DAP/62DAP | 1.54637 | 0.448 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.0076 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.39797 | 0.078 |
Mature Green Tomato/Ripe Tomato | 0.97683 | 0.66 |
Immature Eggplant/Mature Eggplant | 1.09692 | 0.58 |
Ripe Pepper/Ripe Tomato | 1.57117 | 1 |
Mature Eggplant/Ripe Tomato | 0.80762 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.92887 | 0.613 |
1-1-2/M82 | 0.9963 | 1 |
12-2/M82 | 0.98976 | 0.955 |
12-4/M82 | 0.97725 | 1 |
1-3/M82 | 0.98042 | 0.501 |
2-1-1/M82 | 1.02043 | 1 |
2-1/M82 | 1.15011 | 0.345 |
2-6/M82 | 0.93101 | 0.501 |
3-2/M82 | 0.98089 | |
4-1-1/M82 | 0.94151 | 1 |
4-1/M82 | 1.03324 | 0.512 |
4-3-2/M82 | 0.95531 | 1 |
4-3/M82 | 1.03602 | 1 |
5-3/M82 | 1.02339 | 1 |
6-2/M82 | 1.01659 | 1 |
6-3/M82 | 1.02267 | 1 |
7-1/M82 | 0.97203 | 1 |
7-2/M82 | 1.01823 | 1 |
9-3-2/M82 | 0.89877 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.9818 | 1 |
IL2-6/WTpooled | 0.87404 | 1 |
IL7-5/WTpooled | 1.04684 | |
IL7-3/WTpooled | 1.09736 | 1 |
IL12-4/WTpooled | 1.08642 | 0.546 |
IL1-4/WTpooled | 1.00099 | 1 |
WT/WTpooled | 1.05834 | 0.874 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.94823 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.10303 | 0.629 |
DC3000/delta hrp 6h | 0.78548 | 0.95 |
DC3000/delta hrp 12h | 1.06904 | 1 |
DC3000/delta hrp 24h | 1.07311 | 0.673 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.44269 | 0.121 |
DC3000 delta B/DC3000 delta AB | 1.11489 | 0.324 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.30322 | 1 |
Exp 36h | 1.40242 | 0.349 |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98861 | 1 |
Var 0h | 1.93379 | 0.936 |
Var 12h I row2-row1 | 1.19417 | 0.196 |
Var 12h NI row2-row1 | 0.98948 | 1 |
Var 36h I row2-row1 | 0.989 | 1 |
Var 36h NI row2-row1 | 0.91878 | 0.584 |
Var 60h I row2-row1 | 1.47388 | 1 |
Var 60h NI row2-row1 | 1.07418 | 0.904 |
Time course 0hI-0hNI | 1.05987 | 0.852 |
Time course 12hI-12hNI | 1.03553 | 0.81 |
Time course 36hI-36hNI | 0.93519 | 0.323 |
Time course 60hI-60hNI | 1.38192 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98162 | 0.315 |
transgenic ySAMdc/azygous control (breaker) | 0.99199 | 1 |
transgenic ySAMdc/azygous control (red) | 1.03487 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.94394 | 0.22 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.77573 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.07372 | 0.307 |
Manapal/WT (break) | 1.07444 | 1 |
Manapal/WT (red) | 0.9548 | 0.728 |
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