Expression of 1-1-8.1.6.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.845440.253
27DAP/17DAP1.355310.742
39DAP/27DAP0.972740.719
41DAP/39DAP1.028840.758
42DAP/41DAP1.102550.903
43DAP/42DAP0.783790.7
47DAP/43DAP1.607410.618
52DAP/47DAP0.990170.842
57DAP/52DAP0.823860.666

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.837440.026
17DAP/reference0.774590.158
27DAP/reference0.581250.021
39DAP/reference0.721340.04
41DAP/reference0.566680.016
42DAP/reference0.727480.001
43DAP/reference0.618260.015
47DAP/reference0.727680.007
52DAP/reference0.723880.096
57DAP/reference0.875170.091

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.979240.716
27DAP/17DAP0.989020.919
39DAP/27DAP1.03630.623
41DAP/39DAP1.111060.641
42DAP/41DAP0.996660.902
43DAP/42DAP0.95570.216
47DAP/43DAP0.992110.961
52DAP/47DAP1.015070.939
57DAP/52DAP1.012121
57DAP/7DAP1.085961

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.17370.101
17DAP/reference0.959150.094
27DAP/reference0.870720.011
39DAP/reference0.979870.354
41DAP/reference0.96350.213
42DAP/reference1.123650.686
43DAP/reference0.983870.502
47DAP/reference0.998371
52DAP/reference0.905480.021
57DAP/reference0.898750.02

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.153330.524
17DAP/reference0.87710.195
27DAP/reference0.81290.048
39DAP/reference0.868830.178
41DAP/reference0.785050.038
42DAP/reference0.921330.237
43DAP/reference0.785520.092
47DAP/reference0.765960.105
52DAP/reference0.602450.025
57DAP/reference0.585010.003

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.982140.197
17DAP/reference0.992550.778
27DAP/reference0.841620.102
39DAP/reference0.806410.069
41DAP/reference0.876390.119
42DAP/reference0.850050.036
43DAP/reference0.890350.076
47DAP/reference0.62980.019
52DAP/reference0.787530.084
57DAP/reference0.997890.672

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.878781
26DAP/20DAP0.964361
34DAP/26DAP1.048021
51DAP/34DAP0.898980.252
52DAP/51DAP0.985981
53DAP/52DAP1.003251
55DAP/53DAP1.046060.782
57DAP/55DAP0.790220.249
62DAP/57DAPN/AN/A
68DAP/62DAP10.66180.037
68DAP/14DAP7.683370.153

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.992050.696

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.70760.058
Mature Green Tomato/Ripe Tomato0.517920.027
Immature Eggplant/Mature Eggplant1.33810.05
Ripe Pepper/Ripe Tomato1.412681
Mature Eggplant/Ripe Tomato1.411471

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.992030.961
1-1-2/M821.092380.977
12-2/M820.993211
12-4/M821.026751
1-3/M820.978451
2-1-1/M821.017750.689
2-1/M821.331931
2-6/M821.089230.695
3-2/M821.09355
4-1-1/M820.974821
4-1/M820.93285
4-3-2/M821.42073
4-3/M821.026281
5-3/M821.043971
6-2/M821.063521
6-3/M821.051341
7-1/M821.007951
7-2/M820.979411
9-3-2/M820.625870.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.73210.243
IL2-6/WTpooled0.865290.383
IL7-5/WTpooled1.506270.792
IL7-3/WTpooled1.14431
IL12-4/WTpooled1.039910.891
IL1-4/WTpooled0.920911
WT/WTpooled0.975921

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.857830.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.965411
DC3000/delta hrp 6h1.157321
DC3000/delta hrp 12h1.050971
DC3000/delta hrp 24h0.940550.494

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.042740.556
DC3000 delta B/DC3000 delta AB1.041060.614

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.067571
Exp 36h1.24751
Exp 60h0.784210.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.021981
Var 0h1.079431
Var 12h I row2-row11.153350.283
Var 12h NI row2-row11.001521
Var 36h I row2-row10.931740.805
Var 36h NI row2-row10.881950.478
Var 60h I row2-row11.966331
Var 60h NI row2-row11.129050.904
Time course 0hI-0hNI0.987990.991
Time course 12hI-12hNI1.036580.746
Time course 36hI-36hNI1.040480.355
Time course 60hI-60hNI1.426070.015

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.598290.246
transgenic ySAMdc/azygous control (breaker)0.891570.49
transgenic ySAMdc/azygous control (red)0.895191

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.118810.317

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.730520.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.429810.086
Manapal/WT (break)2.74810.183
Manapal/WT (red)1.878511