Expression of 1-1-8.1.6.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.84544 | 0.253 |
27DAP/17DAP | 1.35531 | 0.742 |
39DAP/27DAP | 0.97274 | 0.719 |
41DAP/39DAP | 1.02884 | 0.758 |
42DAP/41DAP | 1.10255 | 0.903 |
43DAP/42DAP | 0.78379 | 0.7 |
47DAP/43DAP | 1.60741 | 0.618 |
52DAP/47DAP | 0.99017 | 0.842 |
57DAP/52DAP | 0.82386 | 0.666 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.83744 | 0.026 |
17DAP/reference | 0.77459 | 0.158 |
27DAP/reference | 0.58125 | 0.021 |
39DAP/reference | 0.72134 | 0.04 |
41DAP/reference | 0.56668 | 0.016 |
42DAP/reference | 0.72748 | 0.001 |
43DAP/reference | 0.61826 | 0.015 |
47DAP/reference | 0.72768 | 0.007 |
52DAP/reference | 0.72388 | 0.096 |
57DAP/reference | 0.87517 | 0.091 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97924 | 0.716 |
27DAP/17DAP | 0.98902 | 0.919 |
39DAP/27DAP | 1.0363 | 0.623 |
41DAP/39DAP | 1.11106 | 0.641 |
42DAP/41DAP | 0.99666 | 0.902 |
43DAP/42DAP | 0.9557 | 0.216 |
47DAP/43DAP | 0.99211 | 0.961 |
52DAP/47DAP | 1.01507 | 0.939 |
57DAP/52DAP | 1.01212 | 1 |
57DAP/7DAP | 1.08596 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1737 | 0.101 |
17DAP/reference | 0.95915 | 0.094 |
27DAP/reference | 0.87072 | 0.011 |
39DAP/reference | 0.97987 | 0.354 |
41DAP/reference | 0.9635 | 0.213 |
42DAP/reference | 1.12365 | 0.686 |
43DAP/reference | 0.98387 | 0.502 |
47DAP/reference | 0.99837 | 1 |
52DAP/reference | 0.90548 | 0.021 |
57DAP/reference | 0.89875 | 0.02 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15333 | 0.524 |
17DAP/reference | 0.8771 | 0.195 |
27DAP/reference | 0.8129 | 0.048 |
39DAP/reference | 0.86883 | 0.178 |
41DAP/reference | 0.78505 | 0.038 |
42DAP/reference | 0.92133 | 0.237 |
43DAP/reference | 0.78552 | 0.092 |
47DAP/reference | 0.76596 | 0.105 |
52DAP/reference | 0.60245 | 0.025 |
57DAP/reference | 0.58501 | 0.003 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98214 | 0.197 |
17DAP/reference | 0.99255 | 0.778 |
27DAP/reference | 0.84162 | 0.102 |
39DAP/reference | 0.80641 | 0.069 |
41DAP/reference | 0.87639 | 0.119 |
42DAP/reference | 0.85005 | 0.036 |
43DAP/reference | 0.89035 | 0.076 |
47DAP/reference | 0.6298 | 0.019 |
52DAP/reference | 0.78753 | 0.084 |
57DAP/reference | 0.99789 | 0.672 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.87878 | 1 |
26DAP/20DAP | 0.96436 | 1 |
34DAP/26DAP | 1.04802 | 1 |
51DAP/34DAP | 0.89898 | 0.252 |
52DAP/51DAP | 0.98598 | 1 |
53DAP/52DAP | 1.00325 | 1 |
55DAP/53DAP | 1.04606 | 0.782 |
57DAP/55DAP | 0.79022 | 0.249 |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | 10.6618 | 0.037 |
68DAP/14DAP | 7.68337 | 0.153 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.99205 | 0.696 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.7076 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.51792 | 0.027 |
Immature Eggplant/Mature Eggplant | 1.3381 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.41268 | 1 |
Mature Eggplant/Ripe Tomato | 1.41147 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99203 | 0.961 |
1-1-2/M82 | 1.09238 | 0.977 |
12-2/M82 | 0.99321 | 1 |
12-4/M82 | 1.02675 | 1 |
1-3/M82 | 0.97845 | 1 |
2-1-1/M82 | 1.01775 | 0.689 |
2-1/M82 | 1.33193 | 1 |
2-6/M82 | 1.08923 | 0.695 |
3-2/M82 | 1.09355 | |
4-1-1/M82 | 0.97482 | 1 |
4-1/M82 | 0.93285 | |
4-3-2/M82 | 1.42073 | |
4-3/M82 | 1.02628 | 1 |
5-3/M82 | 1.04397 | 1 |
6-2/M82 | 1.06352 | 1 |
6-3/M82 | 1.05134 | 1 |
7-1/M82 | 1.00795 | 1 |
7-2/M82 | 0.97941 | 1 |
9-3-2/M82 | 0.62587 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.7321 | 0.243 |
IL2-6/WTpooled | 0.86529 | 0.383 |
IL7-5/WTpooled | 1.50627 | 0.792 |
IL7-3/WTpooled | 1.1443 | 1 |
IL12-4/WTpooled | 1.03991 | 0.891 |
IL1-4/WTpooled | 0.92091 | 1 |
WT/WTpooled | 0.97592 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.85783 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96541 | 1 |
DC3000/delta hrp 6h | 1.15732 | 1 |
DC3000/delta hrp 12h | 1.05097 | 1 |
DC3000/delta hrp 24h | 0.94055 | 0.494 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.04274 | 0.556 |
DC3000 delta B/DC3000 delta AB | 1.04106 | 0.614 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.06757 | 1 |
Exp 36h | 1.2475 | 1 |
Exp 60h | 0.78421 | 0.586 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02198 | 1 |
Var 0h | 1.07943 | 1 |
Var 12h I row2-row1 | 1.15335 | 0.283 |
Var 12h NI row2-row1 | 1.00152 | 1 |
Var 36h I row2-row1 | 0.93174 | 0.805 |
Var 36h NI row2-row1 | 0.88195 | 0.478 |
Var 60h I row2-row1 | 1.96633 | 1 |
Var 60h NI row2-row1 | 1.12905 | 0.904 |
Time course 0hI-0hNI | 0.98799 | 0.991 |
Time course 12hI-12hNI | 1.03658 | 0.746 |
Time course 36hI-36hNI | 1.04048 | 0.355 |
Time course 60hI-60hNI | 1.42607 | 0.015 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.59829 | 0.246 |
transgenic ySAMdc/azygous control (breaker) | 0.89157 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.89519 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.11881 | 0.317 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.73052 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.42981 | 0.086 |
Manapal/WT (break) | 2.7481 | 0.183 |
Manapal/WT (red) | 1.87851 | 1 |
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