Tomato Functional Genomics Database (TFGD)

Expression of 1-1-8.1.6.6

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.11723	0.602
27DAP/17DAP	1.15113	0.828
39DAP/27DAP	0.7636	0.382
41DAP/39DAP	1.36998	0.357
42DAP/41DAP	1.16929	0.938
43DAP/42DAP	0.91482	0.671
47DAP/43DAP	1.33265	0.239
52DAP/47DAP	1.09187	0.895
57DAP/52DAP	0.92541	0.869

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.96189	0.422
17DAP/reference	1.06952	0.675
27DAP/reference	0.94091	0.395
39DAP/reference	1.00108	0.828
41DAP/reference	0.8952	0.154
42DAP/reference	0.98276	0.384
43DAP/reference	1.09237	0.425
47DAP/reference	0.91446	0.191
52DAP/reference	0.88684	0.167
57DAP/reference	0.91862	0.106

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.97543	0.663
27DAP/17DAP	0.98882	0.919
39DAP/27DAP	1.07628	0.422
41DAP/39DAP	1.10023	0.682
42DAP/41DAP	1.00681	0.932
43DAP/42DAP	0.98923	0.875
47DAP/43DAP	0.99195	0.961
52DAP/47DAP	1.02379	0.907
57DAP/52DAP	1.04801	0.699
57DAP/7DAP	1.12747	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.76958	0.059
17DAP/reference	0.876	0.025
27DAP/reference	0.83317	0.013
39DAP/reference	0.89025	0.011
41DAP/reference	0.85207	0.021
42DAP/reference	0.89712	0.058
43DAP/reference	0.86024	0.033
47DAP/reference	0.88598	0.222
52DAP/reference	0.82282	0.021
57DAP/reference	0.86339	0.014

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.97492	0.706
17DAP/reference	1.45155	0.068
27DAP/reference	0.86794	0.188
39DAP/reference	1.00169	0.722
41DAP/reference	1.08033	0.814
42DAP/reference	0.90651	0.237
43DAP/reference	1.12684	0.362
47DAP/reference	0.90108	0.261
52DAP/reference	0.87114	0.22
57DAP/reference	1.31216	0.848

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.83631	0.044
17DAP/reference	1.0691	0.833
27DAP/reference	0.85009	0.035
39DAP/reference	0.84773	0.025
41DAP/reference	0.91854	0.132
42DAP/reference	0.81014	0.041
43DAP/reference	0.81378	0.047
47DAP/reference	0.8168	0.027
52DAP/reference	0.87732	0.242
57DAP/reference	0.89263	0.191

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.08201	0.966
26DAP/20DAP	0.89815	0.317
34DAP/26DAP	1.07278	1
51DAP/34DAP	0.86553	0.093
52DAP/51DAP	0.97377	1
53DAP/52DAP	1.00064	1
55DAP/53DAP	0.94809	0.515
57DAP/55DAP	1.0337	0.906
62DAP/57DAP	N/A	N/A
68DAP/62DAP	1.04248	0.962
68DAP/14DAP	1.5387

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.9938	0.737

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	29.1023	0.058
Mature Green Tomato/Ripe Tomato	0.99189	0.898
Immature Eggplant/Mature Eggplant	0.43777	0.057
Ripe Pepper/Ripe Tomato	0.39686	0.293
Mature Eggplant/Ripe Tomato	1.85518	0.373

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	0.91081	0.651
1-1-2/M82	0.95833	1
12-2/M82	0.97313	0.955
12-4/M82	1.04024	1
1-3/M82	0.94455	1
2-1-1/M82	1.00503	1
2-1/M82	1.38053	1
2-6/M82	1.1101	0.594
3-2/M82	0.97972
4-1-1/M82	0.98517	1
4-1/M82	0.9961	1
4-3-2/M82	1.03615	1
4-3/M82	0.9826	1
5-3/M82	0.89193	0.419
6-2/M82	1.0322	1
6-3/M82	1.12585	0.971
7-1/M82	0.93909	1
7-2/M82	1.04107	1
9-3-2/M82	0.83618	0.355

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.47971	0.277
IL2-6/WTpooled	1.05394	0.659
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	0.97449	1
IL12-4/WTpooled	0.92877	1
IL1-4/WTpooled	1.06422	1
WT/WTpooled	1.01431	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.12521	1

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.76717	1
DC3000/delta hrp 6h	1.06318	0.95
DC3000/delta hrp 12h	1.07497	1
DC3000/delta hrp 24h	1.23551	0.077

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	1.06117	0.134
DC3000 delta B/DC3000 delta AB	0.97768	0.826

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	0.68489	0.661
Exp 60h	0.30881	0.249

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.045	1
Var 0h	0.6006	0.421
Var 12h I row2-row1	1.13694	0.443
Var 12h NI row2-row1	0.95761	0.713
Var 36h I row2-row1	0.92806	1
Var 36h NI row2-row1	0.85267	0.584
Var 60h I row2-row1	0.69398	1
Var 60h NI row2-row1	1.1244	1
Time course 0hI-0hNI	1.12777	0.799
Time course 12hI-12hNI	1.05313	0.738
Time course 36hI-36hNI	1.05146	0.355
Time course 60hI-60hNI	1.31017	0.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.45441	0.347
transgenic ySAMdc/azygous control (breaker)	0.68453	0.49
transgenic ySAMdc/azygous control (red)	1.37588	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.1484	0.086

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.05847	1

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.81267	1
Manapal/WT (break)	0.70606	1
Manapal/WT (red)	1.14405	1