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Expression of 1-1-8.1.7.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.046770.615
27DAP/17DAP1.45830.671
39DAP/27DAP1.336490.638
41DAP/39DAP0.755230.285
42DAP/41DAP1.629770.256
43DAP/42DAP0.971980.918
47DAP/43DAP0.850130.625
52DAP/47DAP1.130250.915
57DAP/52DAP0.951720.94

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.971680.526
17DAP/reference0.813930.031
27DAP/reference0.977160.623
39DAP/reference0.827810.074
41DAP/reference0.696010.009
42DAP/reference1.007760.665
43DAP/reference1.008540.982
47DAP/reference1.028870.728
52DAP/reference0.975760.53
57DAP/reference1.162020.054

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.986780.763
27DAP/17DAP1.017380.957
39DAP/27DAP1.605950.054
41DAP/39DAP1.115420.801
42DAP/41DAP0.932410.538
43DAP/42DAP1.797870.015
47DAP/43DAP1.077090.756
52DAP/47DAP1.236940.489
57DAP/52DAP1.755570.029
57DAP/7DAP2.094860.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.834450.027
17DAP/reference1.802990.011
27DAP/reference1.041170.301
39DAP/reference0.891970.17
41DAP/reference0.877670.06
42DAP/reference1.122120.889
43DAP/reference1.135430.2
47DAP/reference0.822730.128
52DAP/reference0.7420.017
57DAP/reference1.090070.288

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.986270.756
17DAP/reference1.028640.92
27DAP/reference1.204960.114
39DAP/reference1.052020.725
41DAP/reference1.169580.094
42DAP/reference0.998930.655
43DAP/reference0.880780.263
47DAP/reference0.918010.154
52DAP/reference0.929290.327
57DAP/reference0.87940.144

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference3.593710.016
17DAP/reference1.730340.45
27DAP/reference2.081940.017
39DAP/reference1.314770.151
41DAP/reference1.029780.984
42DAP/reference0.949130.552
43DAP/reference0.974810.545
47DAP/reference1.177370.029
52DAP/reference0.860360.296
57DAP/reference1.180460.444

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.902481
26DAP/20DAP0.968461
34DAP/26DAP0.951690.893
51DAP/34DAP0.896930.513
52DAP/51DAP0.932291
53DAP/52DAP0.593750.078
55DAP/53DAP0.654770.077
57DAP/55DAP1.549450.265
62DAP/57DAP1.581880.047
68DAP/62DAP1.392650.845
68DAP/14DAP1.122740.594

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.724810.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.6740.178
Mature Green Tomato/Ripe Tomato0.68803N/A
Immature Eggplant/Mature Eggplant0.606240.062
Ripe Pepper/Ripe Tomato0.501230.224
Mature Eggplant/Ripe Tomato0.430540.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.068931
1-1-2/M821.146341
12-2/M821.060081
12-4/M821.014781
1-3/M821.376670.479
2-1-1/M821.03471
2-1/M820.876890.322
2-6/M820.852070.501
3-2/M821.59057N/A
4-1-1/M821.042861
4-1/M821.0943N/A
4-3-2/M820.684310.487
4-3/M820.82080.578
5-3/M820.916231
6-2/M821.718991
6-3/M820.926260.715
7-1/M821.14961
7-2/M820.986841
9-3-2/M820.967741

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.046071
IL2-6/WTpooled0.980761
IL7-5/WTpooled0.763881
IL7-3/WTpooled1.110471
IL12-4/WTpooled0.926821
IL1-4/WTpooled0.834210.415
WT/WTpooled1.080671

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.305420.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.126160.894
DC3000/delta hrp 6h0.925080.95
DC3000/delta hrp 12h1.031681
DC3000/delta hrp 24h1.246610.174

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.493350.042
DC3000 delta B/DC3000 delta AB1.474230.115

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.287771
Exp 36h1.042911
Exp 60h1.077571

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.960841
Var 0h0.966621
Var 12h I row2-row10.943340.565
Var 12h NI row2-row11.047311
Var 36h I row2-row11.178990.339
Var 36h NI row2-row10.950920.645
Var 60h I row2-row10.794180.439
Var 60h NI row2-row10.850490.516
Time course 0hI-0hNI1.070490.377
Time course 12hI-12hNI0.987640.95
Time course 36hI-36hNI1.525490.007
Time course 60hI-60hNI2.069160.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.021870.921
transgenic ySAMdc/azygous control (breaker)0.792850.173
transgenic ySAMdc/azygous control (red)1.124190.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.371750.194

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.740680.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.050550.14
Manapal/WT (break)0.998931
Manapal/WT (red)0.951570.607