Expression of 1-1-8.1.7.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.59001 | 0.048 |
27DAP/17DAP | 0.52428 | 0.042 |
39DAP/27DAP | 0.82135 | 0.512 |
41DAP/39DAP | 0.79125 | 0.333 |
42DAP/41DAP | 0.96772 | 1 |
43DAP/42DAP | 1.37378 | 0.569 |
47DAP/43DAP | 0.96139 | 0.788 |
52DAP/47DAP | 1.18953 | 0.784 |
57DAP/52DAP | 1.08444 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.62743 | 0.071 |
17DAP/reference | 0.92655 | 0.208 |
27DAP/reference | 0.9792 | 0.654 |
39DAP/reference | 0.7168 | 0.031 |
41DAP/reference | 0.76076 | 0.026 |
42DAP/reference | 0.87378 | 0.002 |
43DAP/reference | 0.89303 | 0.247 |
47DAP/reference | 0.76553 | 0.003 |
52DAP/reference | 0.73426 | 0.089 |
57DAP/reference | 0.90865 | 0.118 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.37325 | 0.032 |
27DAP/17DAP | 2.09638 | 0.044 |
39DAP/27DAP | 0.55181 | 0.058 |
41DAP/39DAP | 0.46452 | 0.013 |
42DAP/41DAP | 0.88523 | 0.439 |
43DAP/42DAP | 1.1019 | 0.664 |
47DAP/43DAP | 0.91223 | 0.63 |
52DAP/47DAP | 0.96566 | 0.905 |
57DAP/52DAP | 0.90075 | 0.501 |
57DAP/7DAP | 0.56169 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93891 | 0.296 |
17DAP/reference | 0.63506 | 0.012 |
27DAP/reference | 0.46327 | 0.01 |
39DAP/reference | 0.438 | 0.011 |
41DAP/reference | 0.45391 | 0.011 |
42DAP/reference | 0.5683 | 0.015 |
43DAP/reference | 0.50994 | 0.01 |
47DAP/reference | 0.51708 | 0.03 |
52DAP/reference | 0.43024 | 0.011 |
57DAP/reference | 0.49318 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.216 | 0.926 |
17DAP/reference | 1.36181 | 0.191 |
27DAP/reference | 1.3127 | 0.143 |
39DAP/reference | 0.80516 | 0.097 |
41DAP/reference | 0.86512 | 0.081 |
42DAP/reference | 0.82773 | 0.169 |
43DAP/reference | 0.76398 | 0.147 |
47DAP/reference | 0.75743 | 0.021 |
52DAP/reference | 0.63384 | 0.006 |
57DAP/reference | 0.66747 | 0.01 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.28819 | 0.037 |
17DAP/reference | 1.16603 | 0.551 |
27DAP/reference | 0.79374 | 0.062 |
39DAP/reference | 0.70377 | 0.019 |
41DAP/reference | 0.41613 | 0.018 |
42DAP/reference | 0.56517 | 0.032 |
43DAP/reference | 0.54808 | 0.035 |
47DAP/reference | 0.67073 | 0.006 |
52DAP/reference | 0.46462 | 0.06 |
57DAP/reference | 0.81301 | 0.12 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.12888 | 0.966 |
26DAP/20DAP | 1.22366 | 0.813 |
34DAP/26DAP | 0.71038 | 0.177 |
51DAP/34DAP | 0.65095 | 0.065 |
52DAP/51DAP | 1.02647 | 0.742 |
53DAP/52DAP | 0.81343 | 0.049 |
55DAP/53DAP | 0.65307 | 0.029 |
57DAP/55DAP | 0.65682 | 0.14 |
62DAP/57DAP | 1.05467 | 1 |
68DAP/62DAP | 1.4092 | 0.162 |
68DAP/14DAP | 0.38366 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.17657 | 0.019 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 3.54804 | 0.058 |
Mature Green Tomato/Ripe Tomato | 38.5764 | 0.025 |
Immature Eggplant/Mature Eggplant | 0.2982 | 0.057 |
Ripe Pepper/Ripe Tomato | 42.7089 | 0.251 |
Mature Eggplant/Ripe Tomato | 73.604 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.82876 | 0.619 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.28032 | |
3-2/M82 | 0.93347 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.98203 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.10402 | 0.277 |
IL2-6/WTpooled | 0.66506 | 0.473 |
IL7-5/WTpooled | 0.7675 | 1 |
IL7-3/WTpooled | 1.40353 | 1 |
IL12-4/WTpooled | 0.89775 | 0.71 |
IL1-4/WTpooled | 0.78915 | 0.834 |
WT/WTpooled | 1.0511 | 0.85 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.81696 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95003 | 1 |
DC3000/delta hrp 6h | 0.87727 | 0.95 |
DC3000/delta hrp 12h | 0.79142 | 1 |
DC3000/delta hrp 24h | 0.31409 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.43627 | 0.023 |
DC3000 delta B/DC3000 delta AB | 0.46068 | 0.021 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.91162 | 1 |
Exp 36h | 0.72154 | 0.539 |
Exp 60h | 0.55552 | 0.251 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00045 | 1 |
Var 0h | 1.03255 | 0.98 |
Var 12h I row2-row1 | 0.95015 | 0.856 |
Var 12h NI row2-row1 | 0.89891 | 0.713 |
Var 36h I row2-row1 | 1.05565 | 0.908 |
Var 36h NI row2-row1 | 1.24488 | 1 |
Var 60h I row2-row1 | 1.13707 | 0.562 |
Var 60h NI row2-row1 | 1.01824 | 1 |
Time course 0hI-0hNI | 1.04748 | 0.852 |
Time course 12hI-12hNI | 0.97411 | 0.847 |
Time course 36hI-36hNI | 0.80663 | 0.023 |
Time course 60hI-60hNI | 0.14474 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.76898 | 0.348 |
transgenic ySAMdc/azygous control (breaker) | 1.59612 | 1 |
transgenic ySAMdc/azygous control (red) | 0.97904 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.67262 | 0.14 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 3.76723 | 0.231 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.66243 | 0.096 |
Manapal/WT (break) | 1.95548 | 1 |
Manapal/WT (red) | 0.94775 | 0.728 |
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