Expression of 1-1-8.1.7.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.983570.839
27DAP/17DAP0.915670.796
39DAP/27DAP1.083530.902
41DAP/39DAP0.914720.646
42DAP/41DAP1.355390.877
43DAP/42DAP1.271230.613
47DAP/43DAP0.954030.825
52DAP/47DAP1.093150.964
57DAP/52DAP1.280710.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.027740.844
17DAP/reference0.96120.597
27DAP/reference0.989850.711
39DAP/reference0.953720.611
41DAP/reference0.878030.341
42DAP/reference1.144780.108
43DAP/reference1.224650.306
47DAP/reference1.515170.027
52DAP/reference1.039031
57DAP/reference1.233090.082

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.365490.064
27DAP/17DAP0.898130.508
39DAP/27DAP0.781350.078
41DAP/39DAP1.267260.427
42DAP/41DAP1.060471
43DAP/42DAP0.762350.022
47DAP/43DAP1.051860.772
52DAP/47DAP0.889320.565
57DAP/52DAP0.947970.678
57DAP/7DAP0.617061

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.181440.069
17DAP/reference1.330560.009
27DAP/reference1.191640.023
39DAP/reference1.307780.006
41DAP/reference1.476560.013
42DAP/reference1.558840.016
43DAP/reference1.546620.007
47DAP/reference1.714380.014
52DAP/reference1.761920.007
57DAP/reference1.640150.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.796710.035
17DAP/reference0.781970.042
27DAP/reference1.227660.195
39DAP/reference1.246140.073
41DAP/reference1.66040.005
42DAP/reference1.223160.294
43DAP/reference0.763440.114
47DAP/reference1.510450.008
52DAP/reference1.03391
57DAP/reference0.910170.298

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.078690.691
17DAP/reference1.001420.839
27DAP/reference1.242970.028
39DAP/reference1.259370.015
41DAP/reference1.286050.014
42DAP/reference1.547530.009
43DAP/reference1.3390.096
47DAP/reference1.18710.68
52DAP/reference1.503190.047
57DAP/reference2.83380.005

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.072150.966
26DAP/20DAP1.100930.778
34DAP/26DAP0.78030.197
51DAP/34DAP0.917890.703
52DAP/51DAP1.026651
53DAP/52DAP1.248460.035
55DAP/53DAP0.830730.293
57DAP/55DAP0.845970.391
62DAP/57DAP1.065590.935
68DAP/62DAP3.565210.01
68DAP/14DAP3.130020.041

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.071390.558

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.989080.863
Mature Green Tomato/Ripe Tomato1.900440.331
Immature Eggplant/Mature Eggplant0.830430.084
Ripe Pepper/Ripe Tomato0.725860.224
Mature Eggplant/Ripe Tomato0.918431

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.850680.883
1-1-2/M821.172441
12-2/M820.949370.955
12-4/M820.929861
1-3/M821.387910.479
2-1-1/M820.863650.465
2-1/M820.637310.519
2-6/M820.79221
3-2/M821.16748
4-1-1/M821.069951
4-1/M821.15576
4-3-2/M821.42467
4-3/M821.271720.268
5-3/M821.090031
6-2/M820.989571
6-3/M820.972331
7-1/M821.03641
7-2/M821.147631
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.272120.277
IL2-6/WTpooled2.925120.395
IL7-5/WTpooled1.38351
IL7-3/WTpooled1.256131
IL12-4/WTpooled1.420280.538
IL1-4/WTpooled1.300560.125
WT/WTpooled1.067191

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.943871

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.075830.921
DC3000/delta hrp 6h0.875140.95
DC3000/delta hrp 12h1.047761
DC3000/delta hrp 24h1.07680.604

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.647360.026
DC3000 delta B/DC3000 delta AB0.569660.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.822811
Exp 36h1.190221
Exp 60h1.049541

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.990951
Var 0h1.083410.936
Var 12h I row2-row10.851280.363
Var 12h NI row2-row11.025951
Var 36h I row2-row10.844080.805
Var 36h NI row2-row11.098851
Var 60h I row2-row10.828180.582
Var 60h NI row2-row10.908130.977
Time course 0hI-0hNI0.952060.751
Time course 12hI-12hNI1.046850.741
Time course 36hI-36hNI1.251020.009
Time course 60hI-60hNI2.935710.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.948240.454
transgenic ySAMdc/azygous control (breaker)1.168531
transgenic ySAMdc/azygous control (red)1.122030.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.097410.142

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.777470.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.880871
Manapal/WT (break)1.155730.381
Manapal/WT (red)1.585770.133