Expression of 1-1-8.1.8.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.149230.656
27DAP/17DAP1.005651
39DAP/27DAP0.82820.458
41DAP/39DAP1.300460.359
42DAP/41DAP1.240920.92
43DAP/42DAP1.011780.937
47DAP/43DAP0.965390.76
52DAP/47DAP1.326630.516
57DAP/52DAP0.915620.845

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.023840.814
17DAP/reference0.909650.074
27DAP/reference0.918530.134
39DAP/reference0.977320.691
41DAP/reference0.910890.114
42DAP/reference0.942920.038
43DAP/reference0.934850.143
47DAP/reference0.957570.137
52DAP/reference0.921920.071
57DAP/reference0.868120.019

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.977590.663
27DAP/17DAP0.999730.969
39DAP/27DAP1.014360.811
41DAP/39DAP1.045850.876
42DAP/41DAP1.072090.783
43DAP/42DAP0.970090.684
47DAP/43DAP1.010370.963
52DAP/47DAP1.012930.979
57DAP/52DAP1.015711
57DAP/7DAP1.054421

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.889090.071
17DAP/reference0.901920.012
27DAP/reference0.899210.012
39DAP/reference0.874250.02
41DAP/reference0.823780.011
42DAP/reference0.835310.01
43DAP/reference0.861340.018
47DAP/reference0.870990.128
52DAP/reference0.83450.019
57DAP/reference0.834540.01

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.976140.706
17DAP/reference1.004120.851
27DAP/reference1.02961
39DAP/reference0.853340.06
41DAP/reference0.92620.137
42DAP/reference0.904080.121
43DAP/reference1.108250.13
47DAP/reference0.886690.027
52DAP/reference0.917640.22
57DAP/reference1.038680.705

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.887550.052
17DAP/reference0.958850.348
27DAP/reference0.945550.113
39DAP/reference0.940420.076
41DAP/reference0.906450.043
42DAP/reference0.889430.071
43DAP/reference0.924970.125
47DAP/reference0.980870.538
52DAP/reference0.905450.31
57DAP/reference0.666060.017

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.827130.961
26DAP/20DAP1.035020.962
34DAP/26DAP1.080130.819
51DAP/34DAP0.934040.571
52DAP/51DAP0.976621
53DAP/52DAP0.933940.604
55DAP/53DAP0.980830.876
57DAP/55DAP0.901810.508
62DAP/57DAP1.010551
68DAP/62DAP1.054420.866
68DAP/14DAP0.966271

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.031091

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.411230.058
Mature Green Tomato/Ripe Tomato1.024130.898
Immature Eggplant/Mature Eggplant0.910910.086
Ripe Pepper/Ripe Tomato0.737520.224
Mature Eggplant/Ripe Tomato0.995351

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.032081
1-1-2/M820.934621
12-2/M821.020341
12-4/M821.059281
1-3/M820.971741
2-1-1/M821.056091
2-1/M821.020461
2-6/M821.10370.395
3-2/M821.091620.426
4-1-1/M821.106421
4-1/M820.850850.665
4-3-2/M821.003791
4-3/M820.799610.72
5-3/M821.013681
6-2/M820.965681
6-3/M821.01891
7-1/M821.083091
7-2/M820.983831
9-3-2/M820.79320.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.43190.277
IL2-6/WTpooled0.698410.348
IL7-5/WTpooled1.0381
IL7-3/WTpooled1.070951
IL12-4/WTpooled0.926181
IL1-4/WTpooled0.773850.457
WT/WTpooled0.955771

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.781840.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.924631
DC3000/delta hrp 6h0.937970.95
DC3000/delta hrp 12h1.078751
DC3000/delta hrp 24h0.935340.575

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.940230.765
DC3000 delta B/DC3000 delta AB0.912260.279

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h0.754210.539
Exp 60h0.685620.249

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.012061
Var 0h0.792860.457
Var 12h I row2-row11.091450.263
Var 12h NI row2-row11.051361
Var 36h I row2-row10.976151
Var 36h NI row2-row10.913870.478
Var 60h I row2-row11.143761
Var 60h NI row2-row11.125370.904
Time course 0hI-0hNI1.060010.574
Time course 12hI-12hNI0.995571
Time course 36hI-36hNI0.94440.162
Time course 60hI-60hNI0.907070.161

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.031430.286
transgenic ySAMdc/azygous control (breaker)0.807580.15
transgenic ySAMdc/azygous control (red)1.107050.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.008530.619

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.929010.284

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.915640.172
Manapal/WT (break)0.617260.299
Manapal/WT (red)1.215211