Expression of 1-1-8.1.8.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.14923 | 0.656 |
27DAP/17DAP | 1.00565 | 1 |
39DAP/27DAP | 0.8282 | 0.458 |
41DAP/39DAP | 1.30046 | 0.359 |
42DAP/41DAP | 1.24092 | 0.92 |
43DAP/42DAP | 1.01178 | 0.937 |
47DAP/43DAP | 0.96539 | 0.76 |
52DAP/47DAP | 1.32663 | 0.516 |
57DAP/52DAP | 0.91562 | 0.845 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02384 | 0.814 |
17DAP/reference | 0.90965 | 0.074 |
27DAP/reference | 0.91853 | 0.134 |
39DAP/reference | 0.97732 | 0.691 |
41DAP/reference | 0.91089 | 0.114 |
42DAP/reference | 0.94292 | 0.038 |
43DAP/reference | 0.93485 | 0.143 |
47DAP/reference | 0.95757 | 0.137 |
52DAP/reference | 0.92192 | 0.071 |
57DAP/reference | 0.86812 | 0.019 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97759 | 0.663 |
27DAP/17DAP | 0.99973 | 0.969 |
39DAP/27DAP | 1.01436 | 0.811 |
41DAP/39DAP | 1.04585 | 0.876 |
42DAP/41DAP | 1.07209 | 0.783 |
43DAP/42DAP | 0.97009 | 0.684 |
47DAP/43DAP | 1.01037 | 0.963 |
52DAP/47DAP | 1.01293 | 0.979 |
57DAP/52DAP | 1.01571 | 1 |
57DAP/7DAP | 1.05442 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88909 | 0.071 |
17DAP/reference | 0.90192 | 0.012 |
27DAP/reference | 0.89921 | 0.012 |
39DAP/reference | 0.87425 | 0.02 |
41DAP/reference | 0.82378 | 0.011 |
42DAP/reference | 0.83531 | 0.01 |
43DAP/reference | 0.86134 | 0.018 |
47DAP/reference | 0.87099 | 0.128 |
52DAP/reference | 0.8345 | 0.019 |
57DAP/reference | 0.83454 | 0.01 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97614 | 0.706 |
17DAP/reference | 1.00412 | 0.851 |
27DAP/reference | 1.0296 | 1 |
39DAP/reference | 0.85334 | 0.06 |
41DAP/reference | 0.9262 | 0.137 |
42DAP/reference | 0.90408 | 0.121 |
43DAP/reference | 1.10825 | 0.13 |
47DAP/reference | 0.88669 | 0.027 |
52DAP/reference | 0.91764 | 0.22 |
57DAP/reference | 1.03868 | 0.705 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88755 | 0.052 |
17DAP/reference | 0.95885 | 0.348 |
27DAP/reference | 0.94555 | 0.113 |
39DAP/reference | 0.94042 | 0.076 |
41DAP/reference | 0.90645 | 0.043 |
42DAP/reference | 0.88943 | 0.071 |
43DAP/reference | 0.92497 | 0.125 |
47DAP/reference | 0.98087 | 0.538 |
52DAP/reference | 0.90545 | 0.31 |
57DAP/reference | 0.66606 | 0.017 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.82713 | 0.961 |
26DAP/20DAP | 1.03502 | 0.962 |
34DAP/26DAP | 1.08013 | 0.819 |
51DAP/34DAP | 0.93404 | 0.571 |
52DAP/51DAP | 0.97662 | 1 |
53DAP/52DAP | 0.93394 | 0.604 |
55DAP/53DAP | 0.98083 | 0.876 |
57DAP/55DAP | 0.90181 | 0.508 |
62DAP/57DAP | 1.01055 | 1 |
68DAP/62DAP | 1.05442 | 0.866 |
68DAP/14DAP | 0.96627 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.03109 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.41123 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.02413 | 0.898 |
Immature Eggplant/Mature Eggplant | 0.91091 | 0.086 |
Ripe Pepper/Ripe Tomato | 0.73752 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.99535 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.03208 | 1 |
1-1-2/M82 | 0.93462 | 1 |
12-2/M82 | 1.02034 | 1 |
12-4/M82 | 1.05928 | 1 |
1-3/M82 | 0.97174 | 1 |
2-1-1/M82 | 1.05609 | 1 |
2-1/M82 | 1.02046 | 1 |
2-6/M82 | 1.1037 | 0.395 |
3-2/M82 | 1.09162 | 0.426 |
4-1-1/M82 | 1.10642 | 1 |
4-1/M82 | 0.85085 | 0.665 |
4-3-2/M82 | 1.00379 | 1 |
4-3/M82 | 0.79961 | 0.72 |
5-3/M82 | 1.01368 | 1 |
6-2/M82 | 0.96568 | 1 |
6-3/M82 | 1.0189 | 1 |
7-1/M82 | 1.08309 | 1 |
7-2/M82 | 0.98383 | 1 |
9-3-2/M82 | 0.7932 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.4319 | 0.277 |
IL2-6/WTpooled | 0.69841 | 0.348 |
IL7-5/WTpooled | 1.038 | 1 |
IL7-3/WTpooled | 1.07095 | 1 |
IL12-4/WTpooled | 0.92618 | 1 |
IL1-4/WTpooled | 0.77385 | 0.457 |
WT/WTpooled | 0.95577 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.78184 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.92463 | 1 |
DC3000/delta hrp 6h | 0.93797 | 0.95 |
DC3000/delta hrp 12h | 1.07875 | 1 |
DC3000/delta hrp 24h | 0.93534 | 0.575 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.94023 | 0.765 |
DC3000 delta B/DC3000 delta AB | 0.91226 | 0.279 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 0.75421 | 0.539 |
Exp 60h | 0.68562 | 0.249 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01206 | 1 |
Var 0h | 0.79286 | 0.457 |
Var 12h I row2-row1 | 1.09145 | 0.263 |
Var 12h NI row2-row1 | 1.05136 | 1 |
Var 36h I row2-row1 | 0.97615 | 1 |
Var 36h NI row2-row1 | 0.91387 | 0.478 |
Var 60h I row2-row1 | 1.14376 | 1 |
Var 60h NI row2-row1 | 1.12537 | 0.904 |
Time course 0hI-0hNI | 1.06001 | 0.574 |
Time course 12hI-12hNI | 0.99557 | 1 |
Time course 36hI-36hNI | 0.9444 | 0.162 |
Time course 60hI-60hNI | 0.90707 | 0.161 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.03143 | 0.286 |
transgenic ySAMdc/azygous control (breaker) | 0.80758 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.10705 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00853 | 0.619 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.92901 | 0.284 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.91564 | 0.172 |
Manapal/WT (break) | 0.61726 | 0.299 |
Manapal/WT (red) | 1.21521 | 1 |
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