Expression of 1-1-8.1.8.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.287410.365
27DAP/17DAP1.324050.742
39DAP/27DAP1.041551
41DAP/39DAP1.493290.321
42DAP/41DAP1.409260.184
43DAP/42DAP1.416860.269
47DAP/43DAP0.990550.904
52DAP/47DAP0.790890.489
57DAP/52DAP1.030180.993

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.00520.601
17DAP/reference1.343640.172
27DAP/reference1.070260.923
39DAP/reference1.192990.747
41DAP/reference1.371890.48
42DAP/reference1.174580.252
43DAP/reference1.365270.233
47DAP/reference1.25960.509
52DAP/reference1.386560.065
57DAP/reference0.988570.639

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.094910.5
27DAP/17DAP1.14360.73
39DAP/27DAP1.068150.581
41DAP/39DAP0.633630.013
42DAP/41DAP1.454980.049
43DAP/42DAP2.196040.013
47DAP/43DAP1.06550.765
52DAP/47DAP1.32030.471
57DAP/52DAP0.731160.167
57DAP/7DAP1.351241

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.944420.445
17DAP/reference0.825730.072
27DAP/reference1.018671
39DAP/reference1.058381
41DAP/reference1.251050.614
42DAP/reference0.917420.371
43DAP/reference1.034260.707
47DAP/reference1.563330.071
52DAP/reference1.70614
57DAP/reference1.163010.438

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.046860.894
17DAP/reference1.133420.406
27DAP/reference1.0841
39DAP/reference1.181290.436
41DAP/reference1.861180.005
42DAP/reference1.246120.057
43DAP/reference1.097140.949
47DAP/reference1.108380.353
52DAP/reference1.306060.106
57DAP/reference1.511620.016

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.836750.039
17DAP/reference1.108960.804
27DAP/reference1.112910.408
39DAP/reference1.626840.466
41DAP/reference1.38370.939
42DAP/reference2.039390.015
43DAP/reference1.321620.439
47DAP/reference1.41350.011
52DAP/reference1.202420.614
57DAP/reference1.518670.011

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.705210.407
26DAP/20DAP0.9440.512
34DAP/26DAP1.144050.542
51DAP/34DAP0.925660.649
52DAP/51DAP0.969251
53DAP/52DAP0.977910.909
55DAP/53DAP0.979250.886
57DAP/55DAP1.04780.923
62DAP/57DAP1.209310.868
68DAP/62DAP1.216340.866
68DAP/14DAP2.008240.074

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.175270.015

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.242020.017
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.80081
Mature Eggplant/Ripe Tomato1.077050.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.048940.877
1-1-2/M821.104851
12-2/M820.96890.623
12-4/M821.41011
1-3/M820.999421
2-1-1/M821.083040.689
2-1/M821.227041
2-6/M820.924071
3-2/M821.069570.549
4-1-1/M821.014831
4-1/M821.071971
4-3-2/M821.345190.253
4-3/M820.980561
5-3/M821.064921
6-2/M820.971481
6-3/M821.008211
7-1/M821.01711
7-2/M820.979850.881
9-3-2/M821.576720.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.856140.321
IL2-6/WTpooled1.600150.395
IL7-5/WTpooled1.035951
IL7-3/WTpooled0.631830.418
IL12-4/WTpooled0.74680.554
IL1-4/WTpooled0.754420.415
WT/WTpooled1.051771

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.295340.193

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.144350.914
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.293381
DC3000/delta hrp 24h0.953880.662

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.57873
DC3000 delta B/DC3000 delta AB1.000951

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.025781
Var 0h1.035431
Var 12h I row2-row10.979090.705
Var 12h NI row2-row10.779170.546
Var 36h I row2-row11.007661
Var 36h NI row2-row11.084571
Var 60h I row2-row11.505170.562
Var 60h NI row2-row11.047821
Time course 0hI-0hNI0.992051
Time course 12hI-12hNI0.991140.984
Time course 36hI-36hNI0.959760.484
Time course 60hI-60hNI0.922190.161

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.803781

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.056320.35

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.092751

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.934681
Manapal/WT (break)1.229240.381
Manapal/WT (red)1.050610.222