Expression of 1-1-8.1.8.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.28741 | 0.365 |
27DAP/17DAP | 1.32405 | 0.742 |
39DAP/27DAP | 1.04155 | 1 |
41DAP/39DAP | 1.49329 | 0.321 |
42DAP/41DAP | 1.40926 | 0.184 |
43DAP/42DAP | 1.41686 | 0.269 |
47DAP/43DAP | 0.99055 | 0.904 |
52DAP/47DAP | 0.79089 | 0.489 |
57DAP/52DAP | 1.03018 | 0.993 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0052 | 0.601 |
17DAP/reference | 1.34364 | 0.172 |
27DAP/reference | 1.07026 | 0.923 |
39DAP/reference | 1.19299 | 0.747 |
41DAP/reference | 1.37189 | 0.48 |
42DAP/reference | 1.17458 | 0.252 |
43DAP/reference | 1.36527 | 0.233 |
47DAP/reference | 1.2596 | 0.509 |
52DAP/reference | 1.38656 | 0.065 |
57DAP/reference | 0.98857 | 0.639 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09491 | 0.5 |
27DAP/17DAP | 1.1436 | 0.73 |
39DAP/27DAP | 1.06815 | 0.581 |
41DAP/39DAP | 0.63363 | 0.013 |
42DAP/41DAP | 1.45498 | 0.049 |
43DAP/42DAP | 2.19604 | 0.013 |
47DAP/43DAP | 1.0655 | 0.765 |
52DAP/47DAP | 1.3203 | 0.471 |
57DAP/52DAP | 0.73116 | 0.167 |
57DAP/7DAP | 1.35124 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94442 | 0.445 |
17DAP/reference | 0.82573 | 0.072 |
27DAP/reference | 1.01867 | 1 |
39DAP/reference | 1.05838 | 1 |
41DAP/reference | 1.25105 | 0.614 |
42DAP/reference | 0.91742 | 0.371 |
43DAP/reference | 1.03426 | 0.707 |
47DAP/reference | 1.56333 | 0.071 |
52DAP/reference | 1.70614 | |
57DAP/reference | 1.16301 | 0.438 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04686 | 0.894 |
17DAP/reference | 1.13342 | 0.406 |
27DAP/reference | 1.084 | 1 |
39DAP/reference | 1.18129 | 0.436 |
41DAP/reference | 1.86118 | 0.005 |
42DAP/reference | 1.24612 | 0.057 |
43DAP/reference | 1.09714 | 0.949 |
47DAP/reference | 1.10838 | 0.353 |
52DAP/reference | 1.30606 | 0.106 |
57DAP/reference | 1.51162 | 0.016 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83675 | 0.039 |
17DAP/reference | 1.10896 | 0.804 |
27DAP/reference | 1.11291 | 0.408 |
39DAP/reference | 1.62684 | 0.466 |
41DAP/reference | 1.3837 | 0.939 |
42DAP/reference | 2.03939 | 0.015 |
43DAP/reference | 1.32162 | 0.439 |
47DAP/reference | 1.4135 | 0.011 |
52DAP/reference | 1.20242 | 0.614 |
57DAP/reference | 1.51867 | 0.011 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.70521 | 0.407 |
26DAP/20DAP | 0.944 | 0.512 |
34DAP/26DAP | 1.14405 | 0.542 |
51DAP/34DAP | 0.92566 | 0.649 |
52DAP/51DAP | 0.96925 | 1 |
53DAP/52DAP | 0.97791 | 0.909 |
55DAP/53DAP | 0.97925 | 0.886 |
57DAP/55DAP | 1.0478 | 0.923 |
62DAP/57DAP | 1.20931 | 0.868 |
68DAP/62DAP | 1.21634 | 0.866 |
68DAP/14DAP | 2.00824 | 0.074 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.17527 | 0.015 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.24202 | 0.017 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.80081 | |
Mature Eggplant/Ripe Tomato | 1.07705 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.04894 | 0.877 |
1-1-2/M82 | 1.10485 | 1 |
12-2/M82 | 0.9689 | 0.623 |
12-4/M82 | 1.4101 | 1 |
1-3/M82 | 0.99942 | 1 |
2-1-1/M82 | 1.08304 | 0.689 |
2-1/M82 | 1.22704 | 1 |
2-6/M82 | 0.92407 | 1 |
3-2/M82 | 1.06957 | 0.549 |
4-1-1/M82 | 1.01483 | 1 |
4-1/M82 | 1.07197 | 1 |
4-3-2/M82 | 1.34519 | 0.253 |
4-3/M82 | 0.98056 | 1 |
5-3/M82 | 1.06492 | 1 |
6-2/M82 | 0.97148 | 1 |
6-3/M82 | 1.00821 | 1 |
7-1/M82 | 1.0171 | 1 |
7-2/M82 | 0.97985 | 0.881 |
9-3-2/M82 | 1.57672 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.85614 | 0.321 |
IL2-6/WTpooled | 1.60015 | 0.395 |
IL7-5/WTpooled | 1.03595 | 1 |
IL7-3/WTpooled | 0.63183 | 0.418 |
IL12-4/WTpooled | 0.7468 | 0.554 |
IL1-4/WTpooled | 0.75442 | 0.415 |
WT/WTpooled | 1.05177 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.29534 | 0.193 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.14435 | 0.914 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.29338 | 1 |
DC3000/delta hrp 24h | 0.95388 | 0.662 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.57873 | |
DC3000 delta B/DC3000 delta AB | 1.00095 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02578 | 1 |
Var 0h | 1.03543 | 1 |
Var 12h I row2-row1 | 0.97909 | 0.705 |
Var 12h NI row2-row1 | 0.77917 | 0.546 |
Var 36h I row2-row1 | 1.00766 | 1 |
Var 36h NI row2-row1 | 1.08457 | 1 |
Var 60h I row2-row1 | 1.50517 | 0.562 |
Var 60h NI row2-row1 | 1.04782 | 1 |
Time course 0hI-0hNI | 0.99205 | 1 |
Time course 12hI-12hNI | 0.99114 | 0.984 |
Time course 36hI-36hNI | 0.95976 | 0.484 |
Time course 60hI-60hNI | 0.92219 | 0.161 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | 0.80378 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05632 | 0.35 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.09275 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.93468 | 1 |
Manapal/WT (break) | 1.22924 | 0.381 |
Manapal/WT (red) | 1.05061 | 0.222 |
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