Expression of 1-1-8.1.8.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.53724 | 0.073 |
27DAP/17DAP | 1.43545 | 0.62 |
39DAP/27DAP | 0.99343 | 0.769 |
41DAP/39DAP | 0.95902 | 0.791 |
42DAP/41DAP | 1.20232 | 0.681 |
43DAP/42DAP | 1.19732 | 0.724 |
47DAP/43DAP | 1.32607 | 0.332 |
52DAP/47DAP | 0.79413 | 0.489 |
57DAP/52DAP | 0.94292 | 0.927 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00437 | 1 |
17DAP/reference | 1.13671 | 0.33 |
27DAP/reference | 0.98095 | 0.642 |
39DAP/reference | 0.99098 | 0.901 |
41DAP/reference | 0.87213 | 0.085 |
42DAP/reference | 0.96083 | 0.176 |
43DAP/reference | 1.007 | 1 |
47DAP/reference | 0.99622 | 0.674 |
52DAP/reference | 0.9697 | 0.515 |
57DAP/reference | 0.91881 | 0.106 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.21847 | 0.241 |
27DAP/17DAP | 0.94443 | 0.748 |
39DAP/27DAP | 1.37522 | 0.067 |
41DAP/39DAP | 0.89431 | 0.434 |
42DAP/41DAP | 1.33544 | 0.003 |
43DAP/42DAP | 1.28098 | 0.014 |
47DAP/43DAP | 0.80551 | 0.053 |
52DAP/47DAP | 1.18596 | 0.649 |
57DAP/52DAP | 0.9602 | 0.678 |
57DAP/7DAP | 1.01293 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02909 | 1 |
17DAP/reference | 0.94446 | 0.144 |
27DAP/reference | 1.09033 | 0.453 |
39DAP/reference | 1.21261 | 0.107 |
41DAP/reference | 1.29618 | 0.072 |
42DAP/reference | 1.17909 | 0.233 |
43DAP/reference | 1.42458 | 0.029 |
47DAP/reference | 1.1682 | 0.152 |
52DAP/reference | 1.16734 | 0.043 |
57DAP/reference | 1.08417 | 0.536 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11461 | 0.36 |
17DAP/reference | 1.0886 | 0.426 |
27DAP/reference | 0.97077 | 0.501 |
39DAP/reference | 1.02406 | 1 |
41DAP/reference | 0.91075 | 0.038 |
42DAP/reference | 0.94848 | 0.289 |
43DAP/reference | 0.98514 | 0.681 |
47DAP/reference | 0.90701 | 0.061 |
52DAP/reference | 0.97947 | 0.5 |
57DAP/reference | 1.05975 | 0.26 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01459 | 1 |
17DAP/reference | 0.98644 | 0.739 |
27DAP/reference | 0.93781 | 0.302 |
39DAP/reference | 1.1344 | 0.285 |
41DAP/reference | 1.02071 | 1 |
42DAP/reference | 1.24748 | 0.233 |
43DAP/reference | 1.24413 | 0.194 |
47DAP/reference | 1.00874 | 1 |
52DAP/reference | 1.29343 | 0.108 |
57DAP/reference | 0.90467 | 0.268 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0003 | 1 |
26DAP/20DAP | 1.18593 | 0.275 |
34DAP/26DAP | 1.21864 | 0.126 |
51DAP/34DAP | 2.14143 | 0.029 |
52DAP/51DAP | 0.91907 | 1 |
53DAP/52DAP | 0.86225 | 0.527 |
55DAP/53DAP | 0.80327 | 0.028 |
57DAP/55DAP | 1.52767 | 0.123 |
62DAP/57DAP | 1.04139 | 1 |
68DAP/62DAP | 1.04295 | 0.919 |
68DAP/14DAP | 1.25177 | 0.676 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.49271 | 0.019 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.28072 | 0.068 |
Mature Green Tomato/Ripe Tomato | 0.93629 | 0.569 |
Immature Eggplant/Mature Eggplant | 1.06247 | 0.348 |
Ripe Pepper/Ripe Tomato | 1.80915 | 1 |
Mature Eggplant/Ripe Tomato | 0.6767 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.23862 | 0.877 |
1-1-2/M82 | 1.17652 | 1 |
12-2/M82 | 0.94679 | 0.955 |
12-4/M82 | 1.0716 | 1 |
1-3/M82 | 1.3919 | 0.26 |
2-1-1/M82 | 0.98117 | 1 |
2-1/M82 | 1.12256 | 1 |
2-6/M82 | 1.41516 | 0.329 |
3-2/M82 | 0.97272 | 1 |
4-1-1/M82 | 1.33862 | 1 |
4-1/M82 | 0.97245 | 1 |
4-3-2/M82 | 1.21313 | 0.508 |
4-3/M82 | 1.36725 | 1 |
5-3/M82 | 1.01198 | 1 |
6-2/M82 | 1.25143 | 1 |
6-3/M82 | 0.96064 | 1 |
7-1/M82 | 0.76154 | 0.466 |
7-2/M82 | 1.07661 | 0.318 |
9-3-2/M82 | 1.39364 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.34372 | 0.365 |
IL2-6/WTpooled | 0.52606 | |
IL7-5/WTpooled | 1.01826 | 1 |
IL7-3/WTpooled | 0.54782 | |
IL12-4/WTpooled | 3.20352 | |
IL1-4/WTpooled | 1.03554 | 1 |
WT/WTpooled | 0.85354 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.15606 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00611 | 1 |
DC3000/delta hrp 6h | 0.89237 | 0.95 |
DC3000/delta hrp 12h | 1.04901 | 1 |
DC3000/delta hrp 24h | 1.03596 | 0.633 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.07409 | |
DC3000 delta B/DC3000 delta AB | 1.4271 | 0.193 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.10934 | 1 |
Exp 60h | 1.57288 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01065 | 1 |
Var 0h | 0.66355 | 0.325 |
Var 12h I row2-row1 | 0.94568 | 0.467 |
Var 12h NI row2-row1 | 1.06475 | 1 |
Var 36h I row2-row1 | 0.96648 | 1 |
Var 36h NI row2-row1 | 0.86221 | 0.421 |
Var 60h I row2-row1 | 1.02241 | 1 |
Var 60h NI row2-row1 | 0.83746 | 0.458 |
Time course 0hI-0hNI | 0.9697 | 0.754 |
Time course 12hI-12hNI | 1.01701 | 0.849 |
Time course 36hI-36hNI | 1.31621 | 0.005 |
Time course 60hI-60hNI | 2.8818 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.91923 | 0.291 |
transgenic ySAMdc/azygous control (breaker) | 1.21135 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.15227 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00619 | 1 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.74908 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.8109 | 1 |
Manapal/WT (break) | 0.7282 | 0.255 |
Manapal/WT (red) | 0.87946 | 0.181 |
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