Expression of 1-1-8.1.8.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.537240.073
27DAP/17DAP1.435450.62
39DAP/27DAP0.993430.769
41DAP/39DAP0.959020.791
42DAP/41DAP1.202320.681
43DAP/42DAP1.197320.724
47DAP/43DAP1.326070.332
52DAP/47DAP0.794130.489
57DAP/52DAP0.942920.927

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.004371
17DAP/reference1.136710.33
27DAP/reference0.980950.642
39DAP/reference0.990980.901
41DAP/reference0.872130.085
42DAP/reference0.960830.176
43DAP/reference1.0071
47DAP/reference0.996220.674
52DAP/reference0.96970.515
57DAP/reference0.918810.106

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.218470.241
27DAP/17DAP0.944430.748
39DAP/27DAP1.375220.067
41DAP/39DAP0.894310.434
42DAP/41DAP1.335440.003
43DAP/42DAP1.280980.014
47DAP/43DAP0.805510.053
52DAP/47DAP1.185960.649
57DAP/52DAP0.96020.678
57DAP/7DAP1.012931

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.029091
17DAP/reference0.944460.144
27DAP/reference1.090330.453
39DAP/reference1.212610.107
41DAP/reference1.296180.072
42DAP/reference1.179090.233
43DAP/reference1.424580.029
47DAP/reference1.16820.152
52DAP/reference1.167340.043
57DAP/reference1.084170.536

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.114610.36
17DAP/reference1.08860.426
27DAP/reference0.970770.501
39DAP/reference1.024061
41DAP/reference0.910750.038
42DAP/reference0.948480.289
43DAP/reference0.985140.681
47DAP/reference0.907010.061
52DAP/reference0.979470.5
57DAP/reference1.059750.26

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.014591
17DAP/reference0.986440.739
27DAP/reference0.937810.302
39DAP/reference1.13440.285
41DAP/reference1.020711
42DAP/reference1.247480.233
43DAP/reference1.244130.194
47DAP/reference1.008741
52DAP/reference1.293430.108
57DAP/reference0.904670.268

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.00031
26DAP/20DAP1.185930.275
34DAP/26DAP1.218640.126
51DAP/34DAP2.141430.029
52DAP/51DAP0.919071
53DAP/52DAP0.862250.527
55DAP/53DAP0.803270.028
57DAP/55DAP1.527670.123
62DAP/57DAP1.041391
68DAP/62DAP1.042950.919
68DAP/14DAP1.251770.676

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.492710.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.280720.068
Mature Green Tomato/Ripe Tomato0.936290.569
Immature Eggplant/Mature Eggplant1.062470.348
Ripe Pepper/Ripe Tomato1.809151
Mature Eggplant/Ripe Tomato0.67671

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.238620.877
1-1-2/M821.176521
12-2/M820.946790.955
12-4/M821.07161
1-3/M821.39190.26
2-1-1/M820.981171
2-1/M821.122561
2-6/M821.415160.329
3-2/M820.972721
4-1-1/M821.338621
4-1/M820.972451
4-3-2/M821.213130.508
4-3/M821.367251
5-3/M821.011981
6-2/M821.251431
6-3/M820.960641
7-1/M820.761540.466
7-2/M821.076610.318
9-3-2/M821.393641

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.343720.365
IL2-6/WTpooled0.52606
IL7-5/WTpooled1.018261
IL7-3/WTpooled0.54782
IL12-4/WTpooled3.20352
IL1-4/WTpooled1.035541
WT/WTpooled0.853541

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.156060.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.006111
DC3000/delta hrp 6h0.892370.95
DC3000/delta hrp 12h1.049011
DC3000/delta hrp 24h1.035960.633

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.07409
DC3000 delta B/DC3000 delta AB1.42710.193

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.109341
Exp 60h1.572880.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.010651
Var 0h0.663550.325
Var 12h I row2-row10.945680.467
Var 12h NI row2-row11.064751
Var 36h I row2-row10.966481
Var 36h NI row2-row10.862210.421
Var 60h I row2-row11.022411
Var 60h NI row2-row10.837460.458
Time course 0hI-0hNI0.96970.754
Time course 12hI-12hNI1.017010.849
Time course 36hI-36hNI1.316210.005
Time course 60hI-60hNI2.88180.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.919230.291
transgenic ySAMdc/azygous control (breaker)1.211350.248
transgenic ySAMdc/azygous control (red)1.152270.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.006191

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.749080.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.81091
Manapal/WT (break)0.72820.255
Manapal/WT (red)0.879460.181