Expression of 1-1-8.1.9.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.101040.63
27DAP/17DAP1.032461
39DAP/27DAP1.009080.84
41DAP/39DAP1.152240.584
42DAP/41DAP1.26140.696
43DAP/42DAP1.096410.899
47DAP/43DAP1.121710.809
52DAP/47DAP1.141930.828
57DAP/52DAP1.059710.95

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.126390.197
17DAP/reference1.310450.031
27DAP/reference1.182740.246
39DAP/reference1.171130.106
41DAP/reference1.409150.015
42DAP/reference1.22010.016
43DAP/reference1.036290.518
47DAP/reference1.162540.075
52DAP/reference1.44070.016
57DAP/reference0.98010.526

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.969510.663
27DAP/17DAP0.967510.887
39DAP/27DAP1.083460.56
41DAP/39DAP1.111320.883
42DAP/41DAP1.065260.74
43DAP/42DAP0.996371
47DAP/43DAP0.988770.947
52DAP/47DAP0.947790.746
57DAP/52DAP0.906630.399
57DAP/7DAP0.71491

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.069330.555
17DAP/reference1.062750.092
27DAP/reference1.065780.107
39DAP/reference1.083880.086
41DAP/reference1.178830.019
42DAP/reference1.124150.233
43DAP/reference1.251870.009
47DAP/reference1.126290.337
52DAP/reference1.131650.183
57DAP/reference1.123010.076

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.152510.11
17DAP/reference1.423620.007
27DAP/reference1.353760.02
39DAP/reference1.258760.046
41DAP/reference1.279650.094
42DAP/reference1.10430.207
43DAP/reference1.202410.327
47DAP/reference1.015410.751
52DAP/reference1.329460.012
57DAP/reference1.284840.078

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.011160.864
17DAP/reference1.064090.685
27DAP/reference1.1160.07
39DAP/reference1.264060.015
41DAP/reference1.086280.286
42DAP/reference1.009950.994
43DAP/reference1.130890.121
47DAP/reference1.108960.372
52DAP/reference1.128520.483
57DAP/reference0.94850.41

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.974851
26DAP/20DAP0.903130.317
34DAP/26DAP1.011841
51DAP/34DAP1.060560.719
52DAP/51DAP1.009061
53DAP/52DAP0.84580.695
55DAP/53DAP1.275980.234
57DAP/55DAP1.280160.474
62DAP/57DAP1.036341
68DAP/62DAP0.967450.81
68DAP/14DAP1.014390.958

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.131060.122

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.775450.058
Mature Green Tomato/Ripe Tomato0.636410.029
Immature Eggplant/Mature Eggplant0.699820.063
Ripe Pepper/Ripe Tomato0.572930.224
Mature Eggplant/Ripe Tomato0.549881

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.052171
1-1-2/M821.110181
12-2/M820.984360.955
12-4/M821.0581
1-3/M821.045331
2-1-1/M821.172050.689
2-1/M820.652510.519
2-6/M821.172250.452
3-2/M820.992481
4-1-1/M821.101141
4-1/M821.132911
4-3-2/M821.207720.241
4-3/M821.122890.268
5-3/M821.005281
6-2/M821.036041
6-3/M820.970431
7-1/M821.09821
7-2/M821.155920.385
9-3-2/M821.291080.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.17585
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.09145
IL1-4/WTpooledN/AN/A
WT/WTpooled1.312771

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.932751

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.985541
DC3000/delta hrp 6h1.039061
DC3000/delta hrp 12h1.084811
DC3000/delta hrp 24h1.125420.728

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.225490.27
DC3000 delta B/DC3000 delta AB1.199010.19

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.268731
Exp 36h0.888870.539
Exp 60h1.058021

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.968231
Var 0h0.819050.457
Var 12h I row2-row11.03210.736
Var 12h NI row2-row11.140770.649
Var 36h I row2-row11.086730.489
Var 36h NI row2-row10.942290.706
Var 60h I row2-row10.905180.582
Var 60h NI row2-row10.9050.818
Time course 0hI-0hNI1.077260.662
Time course 12hI-12hNI1.165590.071
Time course 36hI-36hNI1.314810.025
Time course 60hI-60hNI1.243110.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.078380.397
transgenic ySAMdc/azygous control (breaker)0.769130.132
transgenic ySAMdc/azygous control (red)0.911131

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.904930.049

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.438240.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.273070.105
Manapal/WT (break)0.947951
Manapal/WT (red)1.06881