Expression of 1-1-8.1.9.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.15708 | 0.656 |
27DAP/17DAP | 1.17135 | 0.9 |
39DAP/27DAP | 0.76584 | 0.443 |
41DAP/39DAP | 1.67412 | 0.603 |
42DAP/41DAP | 0.96956 | 1 |
43DAP/42DAP | 1.34004 | 0.619 |
47DAP/43DAP | 0.83691 | 0.496 |
52DAP/47DAP | 1.17218 | 0.757 |
57DAP/52DAP | 1.03761 | 0.993 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06912 | 0.218 |
17DAP/reference | 1.0292 | 0.585 |
27DAP/reference | 0.89415 | 0.176 |
39DAP/reference | 1.04524 | 0.386 |
41DAP/reference | 1.14299 | 0.102 |
42DAP/reference | 1.04024 | 0.544 |
43DAP/reference | 1.0064 | 1 |
47DAP/reference | 1.02509 | 0.84 |
52DAP/reference | 0.86873 | 0.091 |
57DAP/reference | 0.88483 | 0.051 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.23422 | 0.161 |
27DAP/17DAP | 0.93075 | 0.684 |
39DAP/27DAP | 1.08107 | 0.587 |
41DAP/39DAP | 0.97598 | 0.98 |
42DAP/41DAP | 1.00296 | 0.812 |
43DAP/42DAP | 1.03604 | 0.788 |
47DAP/43DAP | 1.00565 | 0.961 |
52DAP/47DAP | 0.96289 | 0.899 |
57DAP/52DAP | 0.95216 | 0.66 |
57DAP/7DAP | 1.65995 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92333 | 0.27 |
17DAP/reference | 1.0986 | 0.054 |
27DAP/reference | 1.18412 | 0.035 |
39DAP/reference | 0.92292 | 0.039 |
41DAP/reference | 0.95101 | 0.357 |
42DAP/reference | 1.10616 | 0.889 |
43DAP/reference | 0.96659 | 0.334 |
47DAP/reference | 0.96466 | 0.504 |
52DAP/reference | 0.86891 | 0.072 |
57DAP/reference | 0.96113 | 0.411 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99162 | 0.848 |
17DAP/reference | 0.99049 | 0.594 |
27DAP/reference | 0.93658 | 0.203 |
39DAP/reference | 0.92691 | 0.235 |
41DAP/reference | 0.9707 | 0.393 |
42DAP/reference | 1.04051 | 0.777 |
43DAP/reference | 1.26916 | 0.288 |
47DAP/reference | 0.97856 | 0.512 |
52DAP/reference | 0.94252 | 0.327 |
57DAP/reference | 1.0819 | 0.593 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92766 | 0.068 |
17DAP/reference | 1.0638 | 0.522 |
27DAP/reference | 1.22488 | 0.029 |
39DAP/reference | 1.12709 | 0.045 |
41DAP/reference | 1.29668 | 0.074 |
42DAP/reference | 1.18583 | 0.05 |
43DAP/reference | 1.05793 | 0.403 |
47DAP/reference | 1.11507 | 0.207 |
52DAP/reference | 1.29571 | 0.06 |
57DAP/reference | 1.06945 | 0.481 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.11499 | 0.966 |
26DAP/20DAP | 0.87672 | 0.512 |
34DAP/26DAP | 1.15763 | 1 |
51DAP/34DAP | 1.53071 | 0.164 |
52DAP/51DAP | 0.88702 | 0.151 |
53DAP/52DAP | 0.84502 | 0.484 |
55DAP/53DAP | 1.21643 | 0.452 |
57DAP/55DAP | 0.96892 | 0.823 |
62DAP/57DAP | 1.16605 | 0.8 |
68DAP/62DAP | 1.03568 | 0.971 |
68DAP/14DAP | 0.56195 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.8228 | 0.224 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.47967 | 0.086 |
Mature Green Tomato/Ripe Tomato | 0.76036 | 0.226 |
Immature Eggplant/Mature Eggplant | 1.17912 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.39831 | 1 |
Mature Eggplant/Ripe Tomato | 1.1774 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.00436 | 1 |
1-1-2/M82 | 1.1177 | 1 |
12-2/M82 | 0.93569 | 0.955 |
12-4/M82 | 1.10875 | 1 |
1-3/M82 | 1.0331 | 1 |
2-1-1/M82 | 1.04726 | 0.689 |
2-1/M82 | 1.06302 | 1 |
2-6/M82 | 0.92217 | 1 |
3-2/M82 | 0.94857 | |
4-1-1/M82 | 1.0252 | 1 |
4-1/M82 | 1.11049 | 0.853 |
4-3-2/M82 | 1.12648 | 1 |
4-3/M82 | 1.08779 | 1 |
5-3/M82 | 1.0495 | 0.572 |
6-2/M82 | 1.01146 | 1 |
6-3/M82 | 0.97091 | 1 |
7-1/M82 | 0.97113 | 1 |
7-2/M82 | 1.05866 | 1 |
9-3-2/M82 | 1.60172 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.66333 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0219 | 1 |
DC3000/delta hrp 6h | 1.11176 | 1 |
DC3000/delta hrp 12h | 0.98853 | 1 |
DC3000/delta hrp 24h | 1.02424 | 0.779 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.94643 | |
DC3000 delta B/DC3000 delta AB | 0.96847 | 0.805 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.96711 | 1 |
Exp 36h | 1.10358 | 1 |
Exp 60h | 1.11817 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01025 | 1 |
Var 0h | 0.88384 | 0.936 |
Var 12h I row2-row1 | 1.10966 | 0.254 |
Var 12h NI row2-row1 | 1.04154 | 1 |
Var 36h I row2-row1 | 1.11158 | 0.742 |
Var 36h NI row2-row1 | 1.13444 | 0.253 |
Var 60h I row2-row1 | 0.86797 | 0.582 |
Var 60h NI row2-row1 | 1.16837 | 0.904 |
Time course 0hI-0hNI | 1.04736 | 0.852 |
Time course 12hI-12hNI | 0.93011 | 0.173 |
Time course 36hI-36hNI | 0.92805 | 0.295 |
Time course 60hI-60hNI | 0.61645 | 0.007 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.04976 | 0.347 |
transgenic ySAMdc/azygous control (breaker) | 1.30144 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.04177 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97964 | 0.085 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.1057 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.00177 | 1 |
Manapal/WT (break) | 1.31071 | 1 |
Manapal/WT (red) | 0.96925 | 0.728 |
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