Expression of 1-1-8.1.9.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.157080.656
27DAP/17DAP1.171350.9
39DAP/27DAP0.765840.443
41DAP/39DAP1.674120.603
42DAP/41DAP0.969561
43DAP/42DAP1.340040.619
47DAP/43DAP0.836910.496
52DAP/47DAP1.172180.757
57DAP/52DAP1.037610.993

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.069120.218
17DAP/reference1.02920.585
27DAP/reference0.894150.176
39DAP/reference1.045240.386
41DAP/reference1.142990.102
42DAP/reference1.040240.544
43DAP/reference1.00641
47DAP/reference1.025090.84
52DAP/reference0.868730.091
57DAP/reference0.884830.051

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.234220.161
27DAP/17DAP0.930750.684
39DAP/27DAP1.081070.587
41DAP/39DAP0.975980.98
42DAP/41DAP1.002960.812
43DAP/42DAP1.036040.788
47DAP/43DAP1.005650.961
52DAP/47DAP0.962890.899
57DAP/52DAP0.952160.66
57DAP/7DAP1.659950.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.923330.27
17DAP/reference1.09860.054
27DAP/reference1.184120.035
39DAP/reference0.922920.039
41DAP/reference0.951010.357
42DAP/reference1.106160.889
43DAP/reference0.966590.334
47DAP/reference0.964660.504
52DAP/reference0.868910.072
57DAP/reference0.961130.411

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.991620.848
17DAP/reference0.990490.594
27DAP/reference0.936580.203
39DAP/reference0.926910.235
41DAP/reference0.97070.393
42DAP/reference1.040510.777
43DAP/reference1.269160.288
47DAP/reference0.978560.512
52DAP/reference0.942520.327
57DAP/reference1.08190.593

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.927660.068
17DAP/reference1.06380.522
27DAP/reference1.224880.029
39DAP/reference1.127090.045
41DAP/reference1.296680.074
42DAP/reference1.185830.05
43DAP/reference1.057930.403
47DAP/reference1.115070.207
52DAP/reference1.295710.06
57DAP/reference1.069450.481

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.114990.966
26DAP/20DAP0.876720.512
34DAP/26DAP1.157631
51DAP/34DAP1.530710.164
52DAP/51DAP0.887020.151
53DAP/52DAP0.845020.484
55DAP/53DAP1.216430.452
57DAP/55DAP0.968920.823
62DAP/57DAP1.166050.8
68DAP/62DAP1.035680.971
68DAP/14DAP0.561950.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.82280.224

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.479670.086
Mature Green Tomato/Ripe Tomato0.760360.226
Immature Eggplant/Mature Eggplant1.179120.05
Ripe Pepper/Ripe Tomato1.398311
Mature Eggplant/Ripe Tomato1.17740.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.004361
1-1-2/M821.11771
12-2/M820.935690.955
12-4/M821.108751
1-3/M821.03311
2-1-1/M821.047260.689
2-1/M821.063021
2-6/M820.922171
3-2/M820.94857
4-1-1/M821.02521
4-1/M821.110490.853
4-3-2/M821.126481
4-3/M821.087791
5-3/M821.04950.572
6-2/M821.011461
6-3/M820.970911
7-1/M820.971131
7-2/M821.058661
9-3-2/M821.60172

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.663330.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.02191
DC3000/delta hrp 6h1.111761
DC3000/delta hrp 12h0.988531
DC3000/delta hrp 24h1.024240.779

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.94643
DC3000 delta B/DC3000 delta AB0.968470.805

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.967111
Exp 36h1.103581
Exp 60h1.118170.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.010251
Var 0h0.883840.936
Var 12h I row2-row11.109660.254
Var 12h NI row2-row11.041541
Var 36h I row2-row11.111580.742
Var 36h NI row2-row11.134440.253
Var 60h I row2-row10.867970.582
Var 60h NI row2-row11.168370.904
Time course 0hI-0hNI1.047360.852
Time course 12hI-12hNI0.930110.173
Time course 36hI-36hNI0.928050.295
Time course 60hI-60hNI0.616450.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.049760.347
transgenic ySAMdc/azygous control (breaker)1.301440.178
transgenic ySAMdc/azygous control (red)1.041770.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.979640.085

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.10570.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.001771
Manapal/WT (break)1.310711
Manapal/WT (red)0.969250.728