Expression of 1-1-8.1.9.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06602 | 0.912 |
27DAP/17DAP | 0.89272 | 0.766 |
39DAP/27DAP | 1.33779 | 0.548 |
41DAP/39DAP | 1.2891 | 0.545 |
42DAP/41DAP | 1.00472 | 1 |
43DAP/42DAP | 1.17229 | 1 |
47DAP/43DAP | 1.02937 | 0.864 |
52DAP/47DAP | 0.91813 | 0.716 |
57DAP/52DAP | 1.41945 | 0.652 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98368 | 0.616 |
17DAP/reference | 1.08886 | 0.193 |
27DAP/reference | 1.14084 | 0.089 |
39DAP/reference | 1.21749 | 0.106 |
41DAP/reference | 1.0379 | 0.808 |
42DAP/reference | 1.0333 | 0.756 |
43DAP/reference | 1.08058 | 0.233 |
47DAP/reference | 1.09515 | 0.284 |
52DAP/reference | 0.87097 | 0.25 |
57DAP/reference | 1.00184 | 0.845 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11749 | 0.326 |
27DAP/17DAP | 1.0924 | 0.677 |
39DAP/27DAP | 1.06068 | 0.636 |
41DAP/39DAP | 0.94661 | 0.875 |
42DAP/41DAP | 1.05535 | 0.852 |
43DAP/42DAP | 0.86127 | 0.082 |
47DAP/43DAP | 1.0259 | 0.844 |
52DAP/47DAP | 1.00321 | 1 |
57DAP/52DAP | 1.23758 | 0.063 |
57DAP/7DAP | 0.97186 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04331 | 0.843 |
17DAP/reference | 1.2382 | 0.014 |
27DAP/reference | 1.06821 | 0.131 |
39DAP/reference | 1.20323 | 0.09 |
41DAP/reference | 1.10316 | 0.325 |
42DAP/reference | 1.21273 | 0.174 |
43DAP/reference | 1.12751 | 0.2 |
47DAP/reference | 1.16557 | 0.353 |
52DAP/reference | 1.12644 | 0.023 |
57DAP/reference | 1.42356 | 0.013 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04024 | 0.642 |
17DAP/reference | 1.19839 | 0.117 |
27DAP/reference | 1.0601 | 0.902 |
39DAP/reference | 0.98771 | 0.554 |
41DAP/reference | 0.84192 | 0.068 |
42DAP/reference | 0.87288 | 0.035 |
43DAP/reference | 1.06023 | 0.735 |
47DAP/reference | 0.93087 | 0.164 |
52DAP/reference | 0.8236 | 0.034 |
57DAP/reference | 1.07913 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16394 | 0.23 |
17DAP/reference | 1.06956 | 0.518 |
27DAP/reference | 1.28058 | 0.04 |
39DAP/reference | 1.22077 | 0.062 |
41DAP/reference | 1.21645 | 0.06 |
42DAP/reference | 1.04937 | 0.789 |
43DAP/reference | 1.05965 | 0.679 |
47DAP/reference | 1.03387 | 1 |
52DAP/reference | 1.77947 | 0.067 |
57DAP/reference | 1.15411 | 0.285 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.05349 | 0.966 |
26DAP/20DAP | 1.53921 | 0.112 |
34DAP/26DAP | 1.13407 | 0.542 |
51DAP/34DAP | 0.99779 | 0.937 |
52DAP/51DAP | 0.87461 | 1 |
53DAP/52DAP | 1.0595 | 0.83 |
55DAP/53DAP | 0.9307 | 0.709 |
57DAP/55DAP | 1.46766 | 0.666 |
62DAP/57DAP | 1.05916 | 1 |
68DAP/62DAP | 1.05604 | 1 |
68DAP/14DAP | 0.89399 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.04343 | 0.627 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.50971 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.84325 | 0.611 |
Immature Eggplant/Mature Eggplant | 1.07068 | 0.379 |
Ripe Pepper/Ripe Tomato | 0.43799 | 0.224 |
Mature Eggplant/Ripe Tomato | 1.12384 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.84003 | 0.651 |
1-1-2/M82 | 1.01217 | 1 |
12-2/M82 | 1.07784 | 1 |
12-4/M82 | 0.97096 | 1 |
1-3/M82 | 1.10097 | 1 |
2-1-1/M82 | 1.12341 | 0.764 |
2-1/M82 | 0.86369 | 0.519 |
2-6/M82 | 0.96528 | 1 |
3-2/M82 | 0.88167 | |
4-1-1/M82 | 1.08233 | 1 |
4-1/M82 | 1.27157 | |
4-3-2/M82 | 0.89752 | 0.698 |
4-3/M82 | 1.03723 | 1 |
5-3/M82 | 1.12391 | 0.436 |
6-2/M82 | 0.90574 | 1 |
6-3/M82 | 1.01371 | 1 |
7-1/M82 | 0.98428 | 1 |
7-2/M82 | 0.99598 | 1 |
9-3-2/M82 | 1.0035 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.459 | 0.395 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.09484 | 1 |
IL12-4/WTpooled | 1.06233 | 0.839 |
IL1-4/WTpooled | 1.21447 | |
WT/WTpooled | 1.01992 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.03954 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0549 | 0.823 |
DC3000/delta hrp 6h | 1.14977 | 1 |
DC3000/delta hrp 12h | 1.00331 | 1 |
DC3000/delta hrp 24h | 1.04306 | 0.582 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.4008 | |
DC3000 delta B/DC3000 delta AB | 1.42911 | 0.121 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.0577 | 1 |
Exp 36h | 1.05426 | 1 |
Exp 60h | 1.36276 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0172 | 1 |
Var 0h | 0.93705 | 1 |
Var 12h I row2-row1 | 1.12889 | 0.506 |
Var 12h NI row2-row1 | 1.08101 | 0.34 |
Var 36h I row2-row1 | 1.12184 | 0.601 |
Var 36h NI row2-row1 | 1.02979 | 1 |
Var 60h I row2-row1 | 0.78345 | 0.287 |
Var 60h NI row2-row1 | 0.94464 | 0.866 |
Time course 0hI-0hNI | 1.04841 | 0.867 |
Time course 12hI-12hNI | 1.03504 | 0.682 |
Time course 36hI-36hNI | 1.37536 | 0.009 |
Time course 60hI-60hNI | 2.02162 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.05288 | 0.372 |
transgenic ySAMdc/azygous control (breaker) | 0.89977 | 0.15 |
transgenic ySAMdc/azygous control (red) | 0.88833 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.94819 | 0.418 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.06712 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.7248 | 0.172 |
Manapal/WT (break) | 0.83487 | 0.333 |
Manapal/WT (red) | 1.07016 | 0.413 |
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