Expression of 1-1-8.1.9.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.066020.912
27DAP/17DAP0.892720.766
39DAP/27DAP1.337790.548
41DAP/39DAP1.28910.545
42DAP/41DAP1.004721
43DAP/42DAP1.172291
47DAP/43DAP1.029370.864
52DAP/47DAP0.918130.716
57DAP/52DAP1.419450.652

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.983680.616
17DAP/reference1.088860.193
27DAP/reference1.140840.089
39DAP/reference1.217490.106
41DAP/reference1.03790.808
42DAP/reference1.03330.756
43DAP/reference1.080580.233
47DAP/reference1.095150.284
52DAP/reference0.870970.25
57DAP/reference1.001840.845

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.117490.326
27DAP/17DAP1.09240.677
39DAP/27DAP1.060680.636
41DAP/39DAP0.946610.875
42DAP/41DAP1.055350.852
43DAP/42DAP0.861270.082
47DAP/43DAP1.02590.844
52DAP/47DAP1.003211
57DAP/52DAP1.237580.063
57DAP/7DAP0.971861

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.043310.843
17DAP/reference1.23820.014
27DAP/reference1.068210.131
39DAP/reference1.203230.09
41DAP/reference1.103160.325
42DAP/reference1.212730.174
43DAP/reference1.127510.2
47DAP/reference1.165570.353
52DAP/reference1.126440.023
57DAP/reference1.423560.013

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.040240.642
17DAP/reference1.198390.117
27DAP/reference1.06010.902
39DAP/reference0.987710.554
41DAP/reference0.841920.068
42DAP/reference0.872880.035
43DAP/reference1.060230.735
47DAP/reference0.930870.164
52DAP/reference0.82360.034
57DAP/reference1.079131

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.163940.23
17DAP/reference1.069560.518
27DAP/reference1.280580.04
39DAP/reference1.220770.062
41DAP/reference1.216450.06
42DAP/reference1.049370.789
43DAP/reference1.059650.679
47DAP/reference1.033871
52DAP/reference1.779470.067
57DAP/reference1.154110.285

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.053490.966
26DAP/20DAP1.539210.112
34DAP/26DAP1.134070.542
51DAP/34DAP0.997790.937
52DAP/51DAP0.874611
53DAP/52DAP1.05950.83
55DAP/53DAP0.93070.709
57DAP/55DAP1.467660.666
62DAP/57DAP1.059161
68DAP/62DAP1.056041
68DAP/14DAP0.893991

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.043430.627

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.509710.058
Mature Green Tomato/Ripe Tomato0.843250.611
Immature Eggplant/Mature Eggplant1.070680.379
Ripe Pepper/Ripe Tomato0.437990.224
Mature Eggplant/Ripe Tomato1.123841

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.840030.651
1-1-2/M821.012171
12-2/M821.077841
12-4/M820.970961
1-3/M821.100971
2-1-1/M821.123410.764
2-1/M820.863690.519
2-6/M820.965281
3-2/M820.88167
4-1-1/M821.082331
4-1/M821.27157
4-3-2/M820.897520.698
4-3/M821.037231
5-3/M821.123910.436
6-2/M820.905741
6-3/M821.013711
7-1/M820.984281
7-2/M820.995981
9-3-2/M821.0035

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.4590.395
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.094841
IL12-4/WTpooled1.062330.839
IL1-4/WTpooled1.21447
WT/WTpooled1.019921

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.039541

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.05490.823
DC3000/delta hrp 6h1.149771
DC3000/delta hrp 12h1.003311
DC3000/delta hrp 24h1.043060.582

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.4008
DC3000 delta B/DC3000 delta AB1.429110.121

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.05771
Exp 36h1.054261
Exp 60h1.362760.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.01721
Var 0h0.937051
Var 12h I row2-row11.128890.506
Var 12h NI row2-row11.081010.34
Var 36h I row2-row11.121840.601
Var 36h NI row2-row11.029791
Var 60h I row2-row10.783450.287
Var 60h NI row2-row10.944640.866
Time course 0hI-0hNI1.048410.867
Time course 12hI-12hNI1.035040.682
Time course 36hI-36hNI1.375360.009
Time course 60hI-60hNI2.021620.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.052880.372
transgenic ySAMdc/azygous control (breaker)0.899770.15
transgenic ySAMdc/azygous control (red)0.888331

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.948190.418

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.067121

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.72480.172
Manapal/WT (break)0.834870.333
Manapal/WT (red)1.070160.413