Expression of 1-1-8.2.1.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.922020.578
27DAP/17DAP1.176230.828
39DAP/27DAP0.939620.641
41DAP/39DAP1.296260.321
42DAP/41DAP1.241360.916
43DAP/42DAP1.001450.937
47DAP/43DAP1.009010.943
52DAP/47DAP1.149240.784
57DAP/52DAP1.095920.948

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.097610.147
17DAP/reference1.066470.399
27DAP/reference0.982820.668
39DAP/reference1.040610.639
41DAP/reference0.974250.542
42DAP/reference1.059270.383
43DAP/reference1.00251
47DAP/reference1.00470.764
52DAP/reference1.086470.335
57DAP/reference1.047790.366

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.044130.871
27DAP/17DAP0.900480.724
39DAP/27DAP1.144330.308
41DAP/39DAP2.043260.719
42DAP/41DAP1.01060.924
43DAP/42DAP1.023731
47DAP/43DAP1.093610.674
52DAP/47DAP1.197740.494
57DAP/52DAP0.959470.7
57DAP/7DAP1.205081

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.859780.183
17DAP/reference0.966360.389
27DAP/reference1.06110.453
39DAP/reference1.241480.126
41DAP/reference1.029860.812
42DAP/reference1.235440.076
43DAP/reference1.068840.802
47DAP/reference0.915860.222
52DAP/reference1.110310.401
57DAP/reference1.23380.17

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.105250.164
17DAP/reference1.151780.053
27DAP/reference1.199890.143
39DAP/reference1.169450.324
41DAP/reference1.124210.285
42DAP/reference1.121910.697
43DAP/reference1.300640.071
47DAP/reference1.032490.841
52DAP/reference1.162510.032
57DAP/reference1.142680.14

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.948590.335
17DAP/reference1.087460.65
27DAP/reference1.118780.621
39DAP/reference0.948620.504
41DAP/reference1.044090.796
42DAP/reference0.990720.816
43DAP/reference1.03430.949
47DAP/reference0.967110.259
52DAP/reference0.836860.223
57DAP/reference1.103610.41

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.994971
26DAP/20DAP0.823780.512
34DAP/26DAP0.891250.753
51DAP/34DAP0.55523
52DAP/51DAP1.51670.087
53DAP/52DAP0.687130.677
55DAP/53DAP1.400850.287
57DAP/55DAP1.07820.854
62DAP/57DAPN/AN/A
68DAP/62DAPN/AN/A
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.049341

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.864530.058
Mature Green Tomato/Ripe Tomato0.98780.898
Immature Eggplant/Mature Eggplant0.651840.075
Ripe Pepper/Ripe Tomato4.122061
Mature Eggplant/Ripe Tomato4.569590.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.16687
1-1-2/M820.996121
12-2/M821.26991
12-4/M821.096391
1-3/M820.600710.286
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.094231
3-2/M820.84815
4-1-1/M820.760460.962
4-1/M821.54086
4-3-2/M821.22443
4-3/M821.147861
5-3/M820.88690.395
6-2/M820.73615
6-3/M821.003091
7-1/M820.65056
7-2/M82N/AN/A
9-3-2/M820.94171

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.185910.493
IL2-6/WTpooled0.896961
IL7-5/WTpooled1.088180.722
IL7-3/WTpooled1.183541
IL12-4/WTpooled1.109610.785
IL1-4/WTpooled0.979221
WT/WTpooled1.095441

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.195551

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.989081
DC3000/delta hrp 6h0.985120.95
DC3000/delta hrp 12h0.991061
DC3000/delta hrp 24h0.956230.7

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.011111
DC3000 delta B/DC3000 delta AB1.185810.472

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.989931
Exp 36h0.75570.589
Exp 60h0.74560.257

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.974051
Var 0h1.024781
Var 12h I row2-row10.801490.565
Var 12h NI row2-row10.961940.82
Var 36h I row2-row10.793031
Var 36h NI row2-row10.96130.743
Var 60h I row2-row10.92979
Var 60h NI row2-row11.27129
Time course 0hI-0hNI0.962280.812
Time course 12hI-12hNI0.953320.738
Time course 36hI-36hNI0.823670.099
Time course 60hI-60hNI0.738020.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.962770.428
transgenic ySAMdc/azygous control (breaker)0.965110.49
transgenic ySAMdc/azygous control (red)1.212060.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.965410.143

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.952610.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)3.106410.083
Manapal/WT (break)2.606920.13
Manapal/WT (red)1.603510.15