Expression of 1-1-8.2.1.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.46191 | 0.061 |
27DAP/17DAP | 1.1743 | 0.819 |
39DAP/27DAP | 1.02611 | 0.749 |
41DAP/39DAP | 0.9943 | 0.92 |
42DAP/41DAP | 1.20013 | 0.871 |
43DAP/42DAP | 1.18652 | 0.772 |
47DAP/43DAP | 1.34397 | 0.288 |
52DAP/47DAP | 0.86987 | 0.637 |
57DAP/52DAP | 1.10695 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.7771 | 0.054 |
17DAP/reference | 0.87086 | 0.079 |
27DAP/reference | 1.06065 | 0.529 |
39DAP/reference | 1.15641 | 0.058 |
41DAP/reference | 0.92173 | 0.341 |
42DAP/reference | 1.41396 | 0.002 |
43DAP/reference | 1.23763 | 0.016 |
47DAP/reference | 1.64239 | 0.001 |
52DAP/reference | 1.29108 | 0.013 |
57DAP/reference | 1.39427 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.2934 | 0.088 |
27DAP/17DAP | 1.13709 | 0.598 |
39DAP/27DAP | 1.11717 | 0.514 |
41DAP/39DAP | 1.06943 | 0.682 |
42DAP/41DAP | 1.01541 | 1 |
43DAP/42DAP | 1.06566 | 0.413 |
47DAP/43DAP | 1.0201 | 0.941 |
52DAP/47DAP | 1.03032 | 0.933 |
57DAP/52DAP | 1.15842 | 0.225 |
57DAP/7DAP | 1.37003 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86818 | 0.071 |
17DAP/reference | 1.02918 | 0.822 |
27DAP/reference | 1.12769 | 0.16 |
39DAP/reference | 1.15557 | 0.126 |
41DAP/reference | 1.12339 | 0.141 |
42DAP/reference | 1.26713 | 0.405 |
43DAP/reference | 1.10004 | 0.226 |
47DAP/reference | 1.47598 | 0.014 |
52DAP/reference | 1.03597 | 0.941 |
57DAP/reference | 0.96121 | 0.396 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80227 | 0.035 |
17DAP/reference | 0.95477 | 0.474 |
27DAP/reference | 1.15823 | 0.331 |
39DAP/reference | 1.08484 | 0.62 |
41DAP/reference | 1.04205 | 0.573 |
42DAP/reference | 1.12838 | 0.157 |
43DAP/reference | 1.07234 | 0.885 |
47DAP/reference | 1.23816 | 0.029 |
52DAP/reference | 1.0829 | 0.156 |
57DAP/reference | 0.97727 | 0.649 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84565 | 0.028 |
17DAP/reference | 0.87405 | 0.21 |
27DAP/reference | 1.02846 | 0.487 |
39DAP/reference | 1.02681 | 0.596 |
41DAP/reference | 0.93595 | 0.026 |
42DAP/reference | 1.42703 | 0.021 |
43DAP/reference | 1.5906 | 0.006 |
47DAP/reference | 1.42054 | 0.009 |
52DAP/reference | 1.49305 | 0.033 |
57DAP/reference | 1.51975 | 0.02 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.93899 | 1 |
26DAP/20DAP | 1.02881 | 1 |
34DAP/26DAP | 1.06674 | 1 |
51DAP/34DAP | 1.32254 | 0.058 |
52DAP/51DAP | 0.9351 | 1 |
53DAP/52DAP | 1.24131 | 0.296 |
55DAP/53DAP | 0.76536 | 0.102 |
57DAP/55DAP | 1.00397 | 0.94 |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | 1.19313 | 0.831 |
68DAP/14DAP | 1.281 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.32678 | 0.105 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.59393 | 0.131 |
Mature Green Tomato/Ripe Tomato | 0.67454 | 0.017 |
Immature Eggplant/Mature Eggplant | 0.77389 | 0.075 |
Ripe Pepper/Ripe Tomato | 0.79551 | 1 |
Mature Eggplant/Ripe Tomato | 0.27819 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99715 | 1 |
1-1-2/M82 | 1.10765 | 1 |
12-2/M82 | 0.94229 | 0.955 |
12-4/M82 | 1.17745 | 1 |
1-3/M82 | 1.16323 | 1 |
2-1-1/M82 | 0.99016 | 1 |
2-1/M82 | 0.79097 | 0.519 |
2-6/M82 | 1.25792 | 0.425 |
3-2/M82 | 0.87757 | |
4-1-1/M82 | 1.27933 | 0.739 |
4-1/M82 | 1.38545 | 0.853 |
4-3-2/M82 | 1.33241 | 0.284 |
4-3/M82 | 1.30872 | 0.268 |
5-3/M82 | 0.99554 | 1 |
6-2/M82 | 1.31914 | 0.235 |
6-3/M82 | 1.03084 | 1 |
7-1/M82 | 0.93526 | 1 |
7-2/M82 | 1.39485 | 0.291 |
9-3-2/M82 | 1.45526 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.88756 | 1 |
IL2-6/WTpooled | 1.10962 | 1 |
IL7-5/WTpooled | 1.15197 | 1 |
IL7-3/WTpooled | 1.01247 | 1 |
IL12-4/WTpooled | 0.64942 | 0.478 |
IL1-4/WTpooled | 1.02359 | 1 |
WT/WTpooled | 0.94386 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.11042 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08618 | 0.894 |
DC3000/delta hrp 6h | 1.0528 | 1 |
DC3000/delta hrp 12h | 1.01531 | 1 |
DC3000/delta hrp 24h | 1.09508 | 0.483 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.15116 | 0.441 |
DC3000 delta B/DC3000 delta AB | 1.23236 | 0.381 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.05975 | 1 |
Exp 36h | 1.31951 | 1 |
Exp 60h | 1.13185 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00255 | 1 |
Var 0h | 1.02455 | 1 |
Var 12h I row2-row1 | 1.00094 | 1 |
Var 12h NI row2-row1 | 0.75571 | 0.82 |
Var 36h I row2-row1 | 1.2045 | 0.309 |
Var 36h NI row2-row1 | 0.97725 | 0.852 |
Var 60h I row2-row1 | 1.13173 | 0.562 |
Var 60h NI row2-row1 | 0.81992 | 0.483 |
Time course 0hI-0hNI | 0.94881 | 0.615 |
Time course 12hI-12hNI | 0.94612 | 0.742 |
Time course 36hI-36hNI | 1.39963 | 0.009 |
Time course 60hI-60hNI | 2.23934 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.08308 | 0.397 |
transgenic ySAMdc/azygous control (breaker) | 1.58911 | 0.166 |
transgenic ySAMdc/azygous control (red) | 1.10586 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03031 | 0.317 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.90874 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.06467 | 1 |
Manapal/WT (red) | 1.14152 | 1 |
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