Expression of 1-1-8.2.1.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.461910.061
27DAP/17DAP1.17430.819
39DAP/27DAP1.026110.749
41DAP/39DAP0.99430.92
42DAP/41DAP1.200130.871
43DAP/42DAP1.186520.772
47DAP/43DAP1.343970.288
52DAP/47DAP0.869870.637
57DAP/52DAP1.106950.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.77710.054
17DAP/reference0.870860.079
27DAP/reference1.060650.529
39DAP/reference1.156410.058
41DAP/reference0.921730.341
42DAP/reference1.413960.002
43DAP/reference1.237630.016
47DAP/reference1.642390.001
52DAP/reference1.291080.013
57DAP/reference1.394270.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.29340.088
27DAP/17DAP1.137090.598
39DAP/27DAP1.117170.514
41DAP/39DAP1.069430.682
42DAP/41DAP1.015411
43DAP/42DAP1.065660.413
47DAP/43DAP1.02010.941
52DAP/47DAP1.030320.933
57DAP/52DAP1.158420.225
57DAP/7DAP1.370031

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.868180.071
17DAP/reference1.029180.822
27DAP/reference1.127690.16
39DAP/reference1.155570.126
41DAP/reference1.123390.141
42DAP/reference1.267130.405
43DAP/reference1.100040.226
47DAP/reference1.475980.014
52DAP/reference1.035970.941
57DAP/reference0.961210.396

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.802270.035
17DAP/reference0.954770.474
27DAP/reference1.158230.331
39DAP/reference1.084840.62
41DAP/reference1.042050.573
42DAP/reference1.128380.157
43DAP/reference1.072340.885
47DAP/reference1.238160.029
52DAP/reference1.08290.156
57DAP/reference0.977270.649

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.845650.028
17DAP/reference0.874050.21
27DAP/reference1.028460.487
39DAP/reference1.026810.596
41DAP/reference0.935950.026
42DAP/reference1.427030.021
43DAP/reference1.59060.006
47DAP/reference1.420540.009
52DAP/reference1.493050.033
57DAP/reference1.519750.02

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.938991
26DAP/20DAP1.028811
34DAP/26DAP1.066741
51DAP/34DAP1.322540.058
52DAP/51DAP0.93511
53DAP/52DAP1.241310.296
55DAP/53DAP0.765360.102
57DAP/55DAP1.003970.94
62DAP/57DAPN/AN/A
68DAP/62DAP1.193130.831
68DAP/14DAP1.281

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.326780.105

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.593930.131
Mature Green Tomato/Ripe Tomato0.674540.017
Immature Eggplant/Mature Eggplant0.773890.075
Ripe Pepper/Ripe Tomato0.795511
Mature Eggplant/Ripe Tomato0.278190.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.997151
1-1-2/M821.107651
12-2/M820.942290.955
12-4/M821.177451
1-3/M821.163231
2-1-1/M820.990161
2-1/M820.790970.519
2-6/M821.257920.425
3-2/M820.87757
4-1-1/M821.279330.739
4-1/M821.385450.853
4-3-2/M821.332410.284
4-3/M821.308720.268
5-3/M820.995541
6-2/M821.319140.235
6-3/M821.030841
7-1/M820.935261
7-2/M821.394850.291
9-3-2/M821.455261

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.887561
IL2-6/WTpooled1.109621
IL7-5/WTpooled1.151971
IL7-3/WTpooled1.012471
IL12-4/WTpooled0.649420.478
IL1-4/WTpooled1.023591
WT/WTpooled0.943861

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.110421

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.086180.894
DC3000/delta hrp 6h1.05281
DC3000/delta hrp 12h1.015311
DC3000/delta hrp 24h1.095080.483

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.151160.441
DC3000 delta B/DC3000 delta AB1.232360.381

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.059751
Exp 36h1.319511
Exp 60h1.131851

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.002551
Var 0h1.024551
Var 12h I row2-row11.000941
Var 12h NI row2-row10.755710.82
Var 36h I row2-row11.20450.309
Var 36h NI row2-row10.977250.852
Var 60h I row2-row11.131730.562
Var 60h NI row2-row10.819920.483
Time course 0hI-0hNI0.948810.615
Time course 12hI-12hNI0.946120.742
Time course 36hI-36hNI1.399630.009
Time course 60hI-60hNI2.239340.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.083080.397
transgenic ySAMdc/azygous control (breaker)1.589110.166
transgenic ySAMdc/azygous control (red)1.105860.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.030310.317

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.908740.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.064671
Manapal/WT (red)1.141521