Expression of 1-1-8.2.10.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.42533 | 0.014 |
27DAP/17DAP | 0.94785 | 0.932 |
39DAP/27DAP | 1.03694 | 0.956 |
41DAP/39DAP | 1.39809 | 0.232 |
42DAP/41DAP | 1.07051 | 0.941 |
43DAP/42DAP | 1.14768 | 1 |
47DAP/43DAP | 0.95876 | 0.815 |
52DAP/47DAP | 0.89528 | 0.683 |
57DAP/52DAP | 0.97592 | 0.956 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.47499 | 0.008 |
17DAP/reference | 1.03133 | 0.813 |
27DAP/reference | 0.87069 | 0.085 |
39DAP/reference | 0.82625 | 0.041 |
41DAP/reference | 0.90947 | 0.341 |
42DAP/reference | 0.94338 | 0.188 |
43DAP/reference | 1.00507 | 0.924 |
47DAP/reference | 0.83779 | 0.05 |
52DAP/reference | 0.82595 | 0.147 |
57DAP/reference | 0.84461 | 0.013 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.49641 | 0.03 |
27DAP/17DAP | 0.98406 | 0.919 |
39DAP/27DAP | 1.22083 | 0.534 |
41DAP/39DAP | 0.81697 | 0.053 |
42DAP/41DAP | 1.27109 | 0.032 |
43DAP/42DAP | 1.14134 | 0.351 |
47DAP/43DAP | 0.79915 | 0.044 |
52DAP/47DAP | 1.00157 | 0.959 |
57DAP/52DAP | 0.767 | 0.313 |
57DAP/7DAP | 0.59472 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08207 | 0.664 |
17DAP/reference | 0.85377 | 0.082 |
27DAP/reference | 0.86405 | 0.035 |
39DAP/reference | 1.03105 | 0.745 |
41DAP/reference | 0.93276 | 0.357 |
42DAP/reference | 0.69202 | 0.014 |
43DAP/reference | 0.86703 | 0.015 |
47DAP/reference | 0.84908 | 0.383 |
52DAP/reference | 0.91845 | 0.363 |
57DAP/reference | 0.80443 | 0.009 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.41498 | 0.049 |
17DAP/reference | 1.12296 | 0.824 |
27DAP/reference | 0.94133 | 0.393 |
39DAP/reference | 0.88163 | 0.173 |
41DAP/reference | 0.86962 | 0.169 |
42DAP/reference | 0.89759 | 0.261 |
43DAP/reference | 0.97323 | 0.581 |
47DAP/reference | 1.12858 | 0.482 |
52DAP/reference | 0.75845 | 0.014 |
57DAP/reference | 0.9271 | 0.408 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.48945 | 0.019 |
17DAP/reference | 1.04891 | 0.746 |
27DAP/reference | 0.98063 | 0.539 |
39DAP/reference | 0.77807 | 0.179 |
41DAP/reference | 0.76576 | 0.032 |
42DAP/reference | 0.86925 | 0.22 |
43DAP/reference | 0.82925 | 0.197 |
47DAP/reference | 0.71149 | 0.016 |
52DAP/reference | 0.8797 | 0.327 |
57DAP/reference | 0.84078 | 0.18 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.23011 | 0.878 |
26DAP/20DAP | 0.57844 | 0.228 |
34DAP/26DAP | 1.36347 | 0.819 |
51DAP/34DAP | 0.46743 | 0.049 |
52DAP/51DAP | 0.7611 | 0.151 |
53DAP/52DAP | 0.89081 | 0.723 |
55DAP/53DAP | 0.77087 | 0.389 |
57DAP/55DAP | 0.85479 | 0.427 |
62DAP/57DAP | 0.9822 | 0.994 |
68DAP/62DAP | 0.82961 | 0.722 |
68DAP/14DAP | 0.83753 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.74095 | 0.039 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 7.5638 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.7685 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.43712 | 0.062 |
Ripe Pepper/Ripe Tomato | 0.39009 | 0.224 |
Mature Eggplant/Ripe Tomato | 21.1941 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.27234 | 0.526 |
1-1-2/M82 | 0.96681 | 1 |
12-2/M82 | 1.18921 | 0.519 |
12-4/M82 | 1.14738 | 1 |
1-3/M82 | 0.64703 | |
2-1-1/M82 | 1.44741 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.61889 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.20476 | 0.853 |
4-3-2/M82 | 1.1726 | 1 |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.91184 | 1 |
6-2/M82 | 0.71581 | |
6-3/M82 | 0.92262 | 0.982 |
7-1/M82 | 0.65217 | |
7-2/M82 | 0.88473 | 0.881 |
9-3-2/M82 | 0.74977 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.70811 | 0.247 |
IL2-6/WTpooled | 1.35092 | |
IL7-5/WTpooled | 0.96044 | |
IL7-3/WTpooled | 0.9919 | 1 |
IL12-4/WTpooled | 1.34832 | |
IL1-4/WTpooled | 0.84859 | |
WT/WTpooled | 0.99345 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.93874 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.13863 | 0.671 |
DC3000/delta hrp 6h | 0.996 | 0.95 |
DC3000/delta hrp 12h | 0.91013 | 1 |
DC3000/delta hrp 24h | 0.65786 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.18405 | 0.076 |
DC3000 delta B/DC3000 delta AB | 1.12619 | 0.423 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.8503 | 1 |
Exp 36h | 0.72812 | 0.449 |
Exp 60h | 0.83274 | 0.586 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98278 | 1 |
Var 0h | 1.147 | 0.936 |
Var 12h I row2-row1 | 0.94801 | 0.77 |
Var 12h NI row2-row1 | 0.90167 | 0.627 |
Var 36h I row2-row1 | 0.74709 | 1 |
Var 36h NI row2-row1 | 1.78746 | 1 |
Var 60h I row2-row1 | 0.80533 | 0.293 |
Var 60h NI row2-row1 | 1.18986 | 0.904 |
Time course 0hI-0hNI | 0.93655 | 0.548 |
Time course 12hI-12hNI | 0.96808 | 0.802 |
Time course 36hI-36hNI | 0.83874 | 0.389 |
Time course 60hI-60hNI | 1.40156 | 0.011 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.58742 | 0.22 |
transgenic ySAMdc/azygous control (breaker) | 1.34167 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.86867 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.70652 | 0.04 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.72736 | 0.233 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.94468 | 1 |
Manapal/WT (break) | 0.52508 | 0.285 |
Manapal/WT (red) | 0.8689 | 0.188 |
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