Expression of 1-1-8.2.10.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.425330.014
27DAP/17DAP0.947850.932
39DAP/27DAP1.036940.956
41DAP/39DAP1.398090.232
42DAP/41DAP1.070510.941
43DAP/42DAP1.147681
47DAP/43DAP0.958760.815
52DAP/47DAP0.895280.683
57DAP/52DAP0.975920.956

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.474990.008
17DAP/reference1.031330.813
27DAP/reference0.870690.085
39DAP/reference0.826250.041
41DAP/reference0.909470.341
42DAP/reference0.943380.188
43DAP/reference1.005070.924
47DAP/reference0.837790.05
52DAP/reference0.825950.147
57DAP/reference0.844610.013

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.496410.03
27DAP/17DAP0.984060.919
39DAP/27DAP1.220830.534
41DAP/39DAP0.816970.053
42DAP/41DAP1.271090.032
43DAP/42DAP1.141340.351
47DAP/43DAP0.799150.044
52DAP/47DAP1.001570.959
57DAP/52DAP0.7670.313
57DAP/7DAP0.594721

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.082070.664
17DAP/reference0.853770.082
27DAP/reference0.864050.035
39DAP/reference1.031050.745
41DAP/reference0.932760.357
42DAP/reference0.692020.014
43DAP/reference0.867030.015
47DAP/reference0.849080.383
52DAP/reference0.918450.363
57DAP/reference0.804430.009

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.414980.049
17DAP/reference1.122960.824
27DAP/reference0.941330.393
39DAP/reference0.881630.173
41DAP/reference0.869620.169
42DAP/reference0.897590.261
43DAP/reference0.973230.581
47DAP/reference1.128580.482
52DAP/reference0.758450.014
57DAP/reference0.92710.408

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.489450.019
17DAP/reference1.048910.746
27DAP/reference0.980630.539
39DAP/reference0.778070.179
41DAP/reference0.765760.032
42DAP/reference0.869250.22
43DAP/reference0.829250.197
47DAP/reference0.711490.016
52DAP/reference0.87970.327
57DAP/reference0.840780.18

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.230110.878
26DAP/20DAP0.578440.228
34DAP/26DAP1.363470.819
51DAP/34DAP0.467430.049
52DAP/51DAP0.76110.151
53DAP/52DAP0.890810.723
55DAP/53DAP0.770870.389
57DAP/55DAP0.854790.427
62DAP/57DAP0.98220.994
68DAP/62DAP0.829610.722
68DAP/14DAP0.837531

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.740950.039

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper7.56380.058
Mature Green Tomato/Ripe Tomato1.76850.015
Immature Eggplant/Mature Eggplant0.437120.062
Ripe Pepper/Ripe Tomato0.390090.224
Mature Eggplant/Ripe Tomato21.19410.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.272340.526
1-1-2/M820.966811
12-2/M821.189210.519
12-4/M821.147381
1-3/M820.64703
2-1-1/M821.44741
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.61889
4-1-1/M82N/AN/A
4-1/M821.204760.853
4-3-2/M821.17261
4-3/M82N/AN/A
5-3/M820.911841
6-2/M820.71581
6-3/M820.922620.982
7-1/M820.65217
7-2/M820.884730.881
9-3-2/M820.74977

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.708110.247
IL2-6/WTpooled1.35092
IL7-5/WTpooled0.96044
IL7-3/WTpooled0.99191
IL12-4/WTpooled1.34832
IL1-4/WTpooled0.84859
WT/WTpooled0.993451

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.938740.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.138630.671
DC3000/delta hrp 6h0.9960.95
DC3000/delta hrp 12h0.910131
DC3000/delta hrp 24h0.657860.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.184050.076
DC3000 delta B/DC3000 delta AB1.126190.423

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.85031
Exp 36h0.728120.449
Exp 60h0.832740.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.982781
Var 0h1.1470.936
Var 12h I row2-row10.948010.77
Var 12h NI row2-row10.901670.627
Var 36h I row2-row10.747091
Var 36h NI row2-row11.787461
Var 60h I row2-row10.805330.293
Var 60h NI row2-row11.189860.904
Time course 0hI-0hNI0.936550.548
Time course 12hI-12hNI0.968080.802
Time course 36hI-36hNI0.838740.389
Time course 60hI-60hNI1.401560.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.587420.22
transgenic ySAMdc/azygous control (breaker)1.341670.248
transgenic ySAMdc/azygous control (red)0.868671

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.706520.04

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.727360.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.944681
Manapal/WT (break)0.525080.285
Manapal/WT (red)0.86890.188