Expression of 1-1-8.2.10.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.979110.811
27DAP/17DAP1.205530.798
39DAP/27DAP0.876740.352
41DAP/39DAP1.39320.273
42DAP/41DAP0.818821
43DAP/42DAP0.766530.454
47DAP/43DAP1.007250.926
52DAP/47DAP1.282150.543
57DAP/52DAP0.970960.956

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.887020.074
17DAP/reference0.942890.321
27DAP/reference1.008591
39DAP/reference1.193850.026
41DAP/reference1.137280.158
42DAP/reference1.012830.755
43DAP/reference1.060070.287
47DAP/reference0.899890.127
52DAP/reference0.980930.504
57DAP/reference1.135470.229

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.967710.663
27DAP/17DAP0.966230.878
39DAP/27DAP1.102880.611
41DAP/39DAP1.138150.774
42DAP/41DAP1.003110.882
43DAP/42DAP0.904860.172
47DAP/43DAP1.047560.873
52DAP/47DAP0.952910.79
57DAP/52DAP0.996570.869
57DAP/7DAP1.21191

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.8720.246
17DAP/reference0.869640.031
27DAP/reference1.183620.06
39DAP/reference0.830810.015
41DAP/reference0.910330.122
42DAP/reference1.106921
43DAP/reference0.825270.016
47DAP/reference0.816110.128
52DAP/reference0.767280.072
57DAP/reference0.758120.012

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.124590.149
17DAP/reference1.256010.028
27DAP/reference1.188060.26
39DAP/reference1.122640.233
41DAP/reference1.102080.705
42DAP/reference1.318420.053
43DAP/reference2.272360.011
47DAP/reference1.404320.017
52DAP/reference1.155770.629
57DAP/reference1.283750.131

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.792350.034
17DAP/reference1.073930.665
27DAP/reference0.850540.097
39DAP/reference0.914670.179
41DAP/reference1.154380.692
42DAP/reference1.267150.039
43DAP/reference0.83510.057
47DAP/reference1.165580.187
52DAP/reference1.046930.714
57DAP/reference1.061320.856

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.905470.182
26DAP/20DAP0.855410.317
34DAP/26DAP1.082511
51DAP/34DAP1.053560.84
52DAP/51DAP1.090670.579
53DAP/52DAP0.999131
55DAP/53DAP1.062970.826
57DAP/55DAP1.097440.881
62DAP/57DAP1.357020.622
68DAP/62DAP1.008390.885
68DAP/14DAP1.025751

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.871210.175

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.035890.632
Immature Eggplant/Mature Eggplant1.185540.123
Ripe Pepper/Ripe Tomato1.52608
Mature Eggplant/Ripe Tomato2.483860.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.940070.536
1-1-2/M820.977971
12-2/M820.894060.955
12-4/M820.961091
1-3/M820.85546
2-1-1/M820.899190.465
2-1/M821.160021
2-6/M821.053270.385
3-2/M820.96272
4-1-1/M820.953941
4-1/M821.29533
4-3-2/M820.822650.698
4-3/M820.769070.72
5-3/M820.976350.642
6-2/M820.98614
6-3/M820.995961
7-1/M820.93006
7-2/M820.996461
9-3-2/M820.66259

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.400790.243
IL2-6/WTpooled1.337450.395
IL7-5/WTpooled0.876180.483
IL7-3/WTpooled0.440480.298
IL12-4/WTpooled0.723420.581
IL1-4/WTpooled0.873280.562
WT/WTpooled0.975261

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.151610.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.02750.921
DC3000/delta hrp 6h1.015341
DC3000/delta hrp 12h1.200331
DC3000/delta hrp 24h1.063070.422

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.24530.208
DC3000 delta B/DC3000 delta AB1.060930.477

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.880830.24
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.981821
Var 0h1.292180.374
Var 12h I row2-row11.065760.654
Var 12h NI row2-row10.870160.546
Var 36h I row2-row10.93460.805
Var 36h NI row2-row10.965080.743
Var 60h I row2-row11.175880.562
Var 60h NI row2-row11.185230.904
Time course 0hI-0hNI1.002931
Time course 12hI-12hNI1.000391
Time course 36hI-36hNI1.015440.722
Time course 60hI-60hNI1.247790.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.991880.722
transgenic ySAMdc/azygous control (breaker)1.091290.178
transgenic ySAMdc/azygous control (red)1.024150.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.033290.163

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.908980.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.884021
Manapal/WT (break)0.683990.333
Manapal/WT (red)0.934440.424