Expression of 1-1-8.2.10.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97911 | 0.811 |
27DAP/17DAP | 1.20553 | 0.798 |
39DAP/27DAP | 0.87674 | 0.352 |
41DAP/39DAP | 1.3932 | 0.273 |
42DAP/41DAP | 0.81882 | 1 |
43DAP/42DAP | 0.76653 | 0.454 |
47DAP/43DAP | 1.00725 | 0.926 |
52DAP/47DAP | 1.28215 | 0.543 |
57DAP/52DAP | 0.97096 | 0.956 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88702 | 0.074 |
17DAP/reference | 0.94289 | 0.321 |
27DAP/reference | 1.00859 | 1 |
39DAP/reference | 1.19385 | 0.026 |
41DAP/reference | 1.13728 | 0.158 |
42DAP/reference | 1.01283 | 0.755 |
43DAP/reference | 1.06007 | 0.287 |
47DAP/reference | 0.89989 | 0.127 |
52DAP/reference | 0.98093 | 0.504 |
57DAP/reference | 1.13547 | 0.229 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96771 | 0.663 |
27DAP/17DAP | 0.96623 | 0.878 |
39DAP/27DAP | 1.10288 | 0.611 |
41DAP/39DAP | 1.13815 | 0.774 |
42DAP/41DAP | 1.00311 | 0.882 |
43DAP/42DAP | 0.90486 | 0.172 |
47DAP/43DAP | 1.04756 | 0.873 |
52DAP/47DAP | 0.95291 | 0.79 |
57DAP/52DAP | 0.99657 | 0.869 |
57DAP/7DAP | 1.2119 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.872 | 0.246 |
17DAP/reference | 0.86964 | 0.031 |
27DAP/reference | 1.18362 | 0.06 |
39DAP/reference | 0.83081 | 0.015 |
41DAP/reference | 0.91033 | 0.122 |
42DAP/reference | 1.10692 | 1 |
43DAP/reference | 0.82527 | 0.016 |
47DAP/reference | 0.81611 | 0.128 |
52DAP/reference | 0.76728 | 0.072 |
57DAP/reference | 0.75812 | 0.012 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12459 | 0.149 |
17DAP/reference | 1.25601 | 0.028 |
27DAP/reference | 1.18806 | 0.26 |
39DAP/reference | 1.12264 | 0.233 |
41DAP/reference | 1.10208 | 0.705 |
42DAP/reference | 1.31842 | 0.053 |
43DAP/reference | 2.27236 | 0.011 |
47DAP/reference | 1.40432 | 0.017 |
52DAP/reference | 1.15577 | 0.629 |
57DAP/reference | 1.28375 | 0.131 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.79235 | 0.034 |
17DAP/reference | 1.07393 | 0.665 |
27DAP/reference | 0.85054 | 0.097 |
39DAP/reference | 0.91467 | 0.179 |
41DAP/reference | 1.15438 | 0.692 |
42DAP/reference | 1.26715 | 0.039 |
43DAP/reference | 0.8351 | 0.057 |
47DAP/reference | 1.16558 | 0.187 |
52DAP/reference | 1.04693 | 0.714 |
57DAP/reference | 1.06132 | 0.856 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.90547 | 0.182 |
26DAP/20DAP | 0.85541 | 0.317 |
34DAP/26DAP | 1.08251 | 1 |
51DAP/34DAP | 1.05356 | 0.84 |
52DAP/51DAP | 1.09067 | 0.579 |
53DAP/52DAP | 0.99913 | 1 |
55DAP/53DAP | 1.06297 | 0.826 |
57DAP/55DAP | 1.09744 | 0.881 |
62DAP/57DAP | 1.35702 | 0.622 |
68DAP/62DAP | 1.00839 | 0.885 |
68DAP/14DAP | 1.02575 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.87121 | 0.175 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.03589 | 0.632 |
Immature Eggplant/Mature Eggplant | 1.18554 | 0.123 |
Ripe Pepper/Ripe Tomato | 1.52608 | |
Mature Eggplant/Ripe Tomato | 2.48386 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.94007 | 0.536 |
1-1-2/M82 | 0.97797 | 1 |
12-2/M82 | 0.89406 | 0.955 |
12-4/M82 | 0.96109 | 1 |
1-3/M82 | 0.85546 | |
2-1-1/M82 | 0.89919 | 0.465 |
2-1/M82 | 1.16002 | 1 |
2-6/M82 | 1.05327 | 0.385 |
3-2/M82 | 0.96272 | |
4-1-1/M82 | 0.95394 | 1 |
4-1/M82 | 1.29533 | |
4-3-2/M82 | 0.82265 | 0.698 |
4-3/M82 | 0.76907 | 0.72 |
5-3/M82 | 0.97635 | 0.642 |
6-2/M82 | 0.98614 | |
6-3/M82 | 0.99596 | 1 |
7-1/M82 | 0.93006 | |
7-2/M82 | 0.99646 | 1 |
9-3-2/M82 | 0.66259 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.40079 | 0.243 |
IL2-6/WTpooled | 1.33745 | 0.395 |
IL7-5/WTpooled | 0.87618 | 0.483 |
IL7-3/WTpooled | 0.44048 | 0.298 |
IL12-4/WTpooled | 0.72342 | 0.581 |
IL1-4/WTpooled | 0.87328 | 0.562 |
WT/WTpooled | 0.97526 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.15161 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0275 | 0.921 |
DC3000/delta hrp 6h | 1.01534 | 1 |
DC3000/delta hrp 12h | 1.20033 | 1 |
DC3000/delta hrp 24h | 1.06307 | 0.422 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.2453 | 0.208 |
DC3000 delta B/DC3000 delta AB | 1.06093 | 0.477 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.88083 | 0.24 |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98182 | 1 |
Var 0h | 1.29218 | 0.374 |
Var 12h I row2-row1 | 1.06576 | 0.654 |
Var 12h NI row2-row1 | 0.87016 | 0.546 |
Var 36h I row2-row1 | 0.9346 | 0.805 |
Var 36h NI row2-row1 | 0.96508 | 0.743 |
Var 60h I row2-row1 | 1.17588 | 0.562 |
Var 60h NI row2-row1 | 1.18523 | 0.904 |
Time course 0hI-0hNI | 1.00293 | 1 |
Time course 12hI-12hNI | 1.00039 | 1 |
Time course 36hI-36hNI | 1.01544 | 0.722 |
Time course 60hI-60hNI | 1.24779 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99188 | 0.722 |
transgenic ySAMdc/azygous control (breaker) | 1.09129 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.02415 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03329 | 0.163 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.90898 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.88402 | 1 |
Manapal/WT (break) | 0.68399 | 0.333 |
Manapal/WT (red) | 0.93444 | 0.424 |
|
|