Expression of 1-1-8.2.10.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.489250.997
27DAP/17DAP1.586490.592
39DAP/27DAP0.949910.67
41DAP/39DAP1.179440.549
42DAP/41DAP1.607470.654
43DAP/42DAP0.902750.801
47DAP/43DAP0.659220.099
52DAP/47DAP1.520450.434
57DAP/52DAP0.74720.666

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.277880.021
17DAP/reference1.11430.294
27DAP/reference1.244040.051
39DAP/reference0.955780.513
41DAP/reference1.095750.451
42DAP/reference1.6750.001
43DAP/reference1.053770.34
47DAP/reference0.948040.242
52DAP/reference0.688660.021
57DAP/reference0.82360.019

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.035980.782
27DAP/17DAP1.06620.942
39DAP/27DAP1.443960.112
41DAP/39DAP1.610540.011
42DAP/41DAP0.61050.026
43DAP/42DAP1.474490.019
47DAP/43DAP1.075340.837
52DAP/47DAP1.146320.71
57DAP/52DAP2.394310.029
57DAP/7DAP2.375260.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.10040.427
17DAP/reference1.127770.102
27DAP/reference1.015680.974
39DAP/reference1.124880.081
41DAP/reference1.051350.723
42DAP/reference1.087360.405
43DAP/reference1.679760.007
47DAP/reference0.992781
52DAP/reference1.34110.024
57DAP/reference1.6040.005

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.025450.915
17DAP/reference1.526240.008
27DAP/reference0.972730.519
39DAP/reference1.138550.124
41DAP/reference1.506740.017
42DAP/reference1.120930.166
43DAP/reference1.162370.38
47DAP/reference1.188820.029
52DAP/reference0.960020.469
57DAP/reference1.153270.188

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.877070.034
17DAP/reference1.075560.362
27DAP/reference1.420090.018
39DAP/reference1.273220.024
41DAP/reference1.239560.069
42DAP/reference1.067020.54
43DAP/reference1.26540.071
47DAP/reference1.139330.265
52DAP/reference1.680490.054
57DAP/reference1.042620.842

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.70820.068
26DAP/20DAP0.77938
34DAP/26DAP0.671040.138
51DAP/34DAP0.957940.791
52DAP/51DAP1.496350.689
53DAP/52DAP0.80650.684
55DAP/53DAP1.474870.399
57DAP/55DAP1.657310.986
62DAP/57DAP1.402170.024
68DAP/62DAP0.48391
68DAP/14DAP1.91246

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker4.101690.015

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.298580.036
Immature Eggplant/Mature Eggplant1.627890.05
Ripe Pepper/Ripe Tomato0.153080.224
Mature Eggplant/Ripe Tomato0.489450.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.946460.934
1-1-2/M821.132071
12-2/M821.386310.421
12-4/M820.97791
1-3/M821.326341
2-1-1/M821.200811
2-1/M820.861460.74
2-6/M822.005140.452
3-2/M821.1052
4-1-1/M821.319961
4-1/M821.589740.295
4-3-2/M821.737940.262
4-3/M821.407241
5-3/M820.558770.395
6-2/M822.777660.219
6-3/M820.894341
7-1/M821.004711
7-2/M821.206360.385
9-3-2/M821.809951

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.28759
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.67394
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooled0.787761

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.42010.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.003461
DC3000/delta hrp 6h1.171461
DC3000/delta hrp 12h0.846391
DC3000/delta hrp 24h1.021580.728

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.63864

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.268540.228
Exp 36h1.402820.349
Exp 60h1.467680.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.056661
Var 0h1.118810.782
Var 12h I row2-row11.121360.222
Var 12h NI row2-row10.656050.82
Var 36h I row2-row11.023991
Var 36h NI row2-row10.933130.743
Var 60h I row2-row10.85760.439
Var 60h NI row2-row10.88330.63
Time course 0hI-0hNI1.108550.799
Time course 12hI-12hNI1.601170.01
Time course 36hI-36hNI2.489540.005
Time course 60hI-60hNI4.208840.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.320060.384
transgenic ySAMdc/azygous control (breaker)0.673680.15
transgenic ySAMdc/azygous control (red)1.206210.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.039550.301

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.314780.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.761060.172
Manapal/WT (break)0.517490.333
Manapal/WT (red)0.454540.181