Expression of 1-1-8.2.10.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.625830.055
27DAP/17DAP1.802620.271
39DAP/27DAP1.423950.073
41DAP/39DAP0.781420.252
42DAP/41DAP0.628560.774
43DAP/42DAP0.869090.761
47DAP/43DAP0.741880.274
52DAP/47DAP2.707170.2
57DAP/52DAP0.811150.784

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.413230.009
17DAP/reference1.003270.904
27DAP/reference0.990580.725
39DAP/reference0.778770.029
41DAP/reference0.879420.026
42DAP/reference1.578750.001
43DAP/reference0.851450.098
47DAP/reference1.008010.636
52DAP/reference1.09010.766
57DAP/reference0.959610.415

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.477270.029
27DAP/17DAP0.996230.969
39DAP/27DAP1.033170.997
41DAP/39DAP1.825230.013
42DAP/41DAP0.564320.009
43DAP/42DAP1.344950.031
47DAP/43DAP1.194160.24
52DAP/47DAP1.229640.676
57DAP/52DAP4.527880.029
57DAP/7DAP2.301

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.475570.025
17DAP/reference1.097960.112
27DAP/reference1.242510.073
39DAP/reference1.170290.157
41DAP/reference1.326950.012
42DAP/reference1.364540.174
43DAP/reference1.562190.011
47DAP/reference1.391940.033
52DAP/reference1.404070.008
57DAP/reference1.422710.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.249590.127
17DAP/reference1.373220.035
27DAP/reference1.7220.016
39DAP/reference1.29050.109
41DAP/reference1.713030.005
42DAP/reference1.484470.009
43DAP/reference0.956610.468
47DAP/reference1.251190.321
52DAP/reference0.904940.06
57DAP/reference1.028791

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.122110.258
17DAP/reference1.007190.9
27DAP/reference1.488040.023
39DAP/reference1.248910.125
41DAP/reference0.957910.512
42DAP/reference1.006831
43DAP/reference1.195730.179
47DAP/reference1.25320.519
52DAP/reference1.879040.052
57DAP/reference3.001540.011

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.933921
26DAP/20DAP1.204710.481
34DAP/26DAP1.13505
51DAP/34DAP2.647360.115
52DAP/51DAP1.163310.776
53DAP/52DAP2.39497
55DAP/53DAP1.680490.049
57DAP/55DAP1.178391
62DAP/57DAP1.381080.393
68DAP/62DAP1.092120.845
68DAP/14DAP0.74524

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.085310.025

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.868510.39
Mature Green Tomato/Ripe Tomato0.245690.029
Immature Eggplant/Mature Eggplant0.942360.72
Ripe Pepper/Ripe Tomato0.391990.224
Mature Eggplant/Ripe Tomato0.270420.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.738680.651
1-1-2/M821.118831
12-2/M823.021890.356
12-4/M820.571770.275
1-3/M822.22404
2-1-1/M820.58466
2-1/M82N/AN/A
2-6/M821.557050.695
3-2/M821.26235
4-1-1/M821.37853
4-1/M82N/AN/A
4-3-2/M821.160750.508
4-3/M821.25022
5-3/M820.333960.364
6-2/M821.760410.235
6-3/M820.997841
7-1/M820.696750.803
7-2/M821.921390.318
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.148940.277
IL2-6/WTpooled1.227270.46
IL7-5/WTpooled1.926510.635
IL7-3/WTpooled0.891541
IL12-4/WTpooled1.081460.695
IL1-4/WTpooled1.1541
WT/WTpooled1.019731

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.454860.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.357340.652
DC3000/delta hrp 6h0.963850.95
DC3000/delta hrp 12h0.963981
DC3000/delta hrp 24h0.972590.84

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.94192
DC3000 delta B/DC3000 delta AB1.270370.193

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.996371
Exp 36h1.478250.326
Exp 60h1.199180.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.974641
Var 0h1.159390.98
Var 12h I row2-row10.852280.338
Var 12h NI row2-row10.723680.627
Var 36h I row2-row10.901311
Var 36h NI row2-row11.063721
Var 60h I row2-row10.837960.285
Var 60h NI row2-row10.873880.572
Time course 0hI-0hNI1.062850.852
Time course 12hI-12hNI1.084640.526
Time course 36hI-36hNI1.790360.004
Time course 60hI-60hNI1.940750.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.728410.36
transgenic ySAMdc/azygous control (breaker)0.38910.137
transgenic ySAMdc/azygous control (red)1.28680.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.100920.063

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.313590.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.031751
Manapal/WT (break)0.994931
Manapal/WT (red)1.174290.413