Expression of 1-1-8.2.10.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.88565 | 0.405 |
27DAP/17DAP | 0.99756 | 1 |
39DAP/27DAP | 1.00047 | 0.876 |
41DAP/39DAP | 0.93348 | 0.717 |
42DAP/41DAP | 0.97963 | 1 |
43DAP/42DAP | 1.02115 | 0.937 |
47DAP/43DAP | 1.36788 | 0.267 |
52DAP/47DAP | 0.90134 | 0.668 |
57DAP/52DAP | 1.08136 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06204 | 0.638 |
17DAP/reference | 1.14862 | 0.077 |
27DAP/reference | 0.91182 | 0.265 |
39DAP/reference | 1.02736 | 0.628 |
41DAP/reference | 1.01698 | 1 |
42DAP/reference | 0.90801 | 0.045 |
43DAP/reference | 1.0423 | 0.547 |
47DAP/reference | 0.92335 | 0.116 |
52DAP/reference | 0.74546 | 0.055 |
57DAP/reference | 0.7028 | 0.016 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.86475 | 0.219 |
27DAP/17DAP | 0.93923 | 0.854 |
39DAP/27DAP | 0.92606 | 0.432 |
41DAP/39DAP | 0.85661 | 0.137 |
42DAP/41DAP | 0.96258 | 0.708 |
43DAP/42DAP | 1.06794 | 0.699 |
47DAP/43DAP | 1.03604 | 0.914 |
52DAP/47DAP | 0.84729 | 0.316 |
57DAP/52DAP | 1.00076 | 0.862 |
57DAP/7DAP | 0.87378 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00267 | 0.758 |
17DAP/reference | 0.85224 | 0.035 |
27DAP/reference | 0.86805 | 0.109 |
39DAP/reference | 1.03686 | 1 |
41DAP/reference | 0.76666 | 0.027 |
42DAP/reference | 0.84446 | 0.136 |
43DAP/reference | 0.80799 | 0.049 |
47DAP/reference | 1.13695 | 0.272 |
52DAP/reference | 0.85849 | 0.115 |
57DAP/reference | 0.7894 | 0.009 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.32014 | 0.139 |
17DAP/reference | 0.99642 | 0.642 |
27DAP/reference | 1.15292 | 0.757 |
39DAP/reference | 0.92525 | 0.298 |
41DAP/reference | 0.84634 | 0.173 |
42DAP/reference | 0.82627 | 0.055 |
43DAP/reference | 1.06297 | 0.929 |
47DAP/reference | 0.89312 | 0.09 |
52DAP/reference | 0.78244 | 0.02 |
57DAP/reference | 0.84672 | 0.278 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01321 | 1 |
17DAP/reference | 1.00343 | 1 |
27DAP/reference | 1.02838 | 0.834 |
39DAP/reference | 0.92153 | 0.246 |
41DAP/reference | 0.85642 | 0.237 |
42DAP/reference | 0.92254 | 0.361 |
43DAP/reference | 0.80092 | 0.095 |
47DAP/reference | 0.89159 | 0.069 |
52DAP/reference | 1.09347 | 0.724 |
57DAP/reference | 0.92903 | 0.315 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.13056 | 0.966 |
26DAP/20DAP | 0.95083 | 1 |
34DAP/26DAP | 1.10036 | 0.819 |
51DAP/34DAP | 1.22068 | 0.171 |
52DAP/51DAP | 0.95116 | 1 |
53DAP/52DAP | 0.96507 | 0.868 |
55DAP/53DAP | 1.06812 | 0.938 |
57DAP/55DAP | 0.97448 | 0.821 |
62DAP/57DAP | 0.83836 | 0.088 |
68DAP/62DAP | 0.83244 | 0.543 |
68DAP/14DAP | 1.53973 | 0.487 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.8238 | 0.224 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.87832 | 0.491 |
Mature Green Tomato/Ripe Tomato | 0.51737 | |
Immature Eggplant/Mature Eggplant | 1.35121 | 0.056 |
Ripe Pepper/Ripe Tomato | 0.6418 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.65365 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.92708 | 0.638 |
1-1-2/M82 | 1.05506 | 1 |
12-2/M82 | 1.02841 | 1 |
12-4/M82 | 1.08746 | 1 |
1-3/M82 | 0.66547 | 0.378 |
2-1-1/M82 | 0.89182 | |
2-1/M82 | 1.04574 | |
2-6/M82 | 0.89565 | 0.501 |
3-2/M82 | 0.90255 | |
4-1-1/M82 | 0.9845 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.06857 | 0.508 |
4-3/M82 | 0.69903 | 0.475 |
5-3/M82 | 1.11156 | 1 |
6-2/M82 | 0.63014 | 1 |
6-3/M82 | 0.99596 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.89534 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.74789 | 0.493 |
IL2-6/WTpooled | 1.36942 | 0.659 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.54363 | 0.839 |
IL1-4/WTpooled | 0.9757 | |
WT/WTpooled | 0.99232 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.13076 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95748 | 0.849 |
DC3000/delta hrp 6h | 0.92292 | 0.95 |
DC3000/delta hrp 12h | 0.98874 | 1 |
DC3000/delta hrp 24h | 0.95393 | 0.642 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.70088 | 0.042 |
DC3000 delta B/DC3000 delta AB | 0.80274 | 0.045 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.1568 | 0.196 |
Exp 36h | 0.83268 | 0.406 |
Exp 60h | 1.37934 | 0.221 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00172 | 1 |
Var 0h | 1.13835 | 0.936 |
Var 12h I row2-row1 | 0.95685 | 0.77 |
Var 12h NI row2-row1 | 0.96409 | 0.82 |
Var 36h I row2-row1 | 0.92381 | 0.805 |
Var 36h NI row2-row1 | 0.92503 | 0.61 |
Var 60h I row2-row1 | 1.25886 | 0.562 |
Var 60h NI row2-row1 | 0.94416 | 0.516 |
Time course 0hI-0hNI | 0.99068 | 1 |
Time course 12hI-12hNI | 0.93251 | 0.464 |
Time course 36hI-36hNI | 0.86723 | 0.22 |
Time course 60hI-60hNI | 0.6999 | 0.026 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.81898 | 0.32 |
transgenic ySAMdc/azygous control (breaker) | 0.77213 | 0.131 |
transgenic ySAMdc/azygous control (red) | 0.96473 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98829 | 0.227 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.93671 | 0.308 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.91651 | 1 |
Manapal/WT (break) | 0.94787 | 1 |
Manapal/WT (red) | 0.85041 | 0.181 |
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