Expression of 1-1-8.2.10.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.885650.405
27DAP/17DAP0.997561
39DAP/27DAP1.000470.876
41DAP/39DAP0.933480.717
42DAP/41DAP0.979631
43DAP/42DAP1.021150.937
47DAP/43DAP1.367880.267
52DAP/47DAP0.901340.668
57DAP/52DAP1.081360.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.062040.638
17DAP/reference1.148620.077
27DAP/reference0.911820.265
39DAP/reference1.027360.628
41DAP/reference1.016981
42DAP/reference0.908010.045
43DAP/reference1.04230.547
47DAP/reference0.923350.116
52DAP/reference0.745460.055
57DAP/reference0.70280.016

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.864750.219
27DAP/17DAP0.939230.854
39DAP/27DAP0.926060.432
41DAP/39DAP0.856610.137
42DAP/41DAP0.962580.708
43DAP/42DAP1.067940.699
47DAP/43DAP1.036040.914
52DAP/47DAP0.847290.316
57DAP/52DAP1.000760.862
57DAP/7DAP0.873781

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.002670.758
17DAP/reference0.852240.035
27DAP/reference0.868050.109
39DAP/reference1.036861
41DAP/reference0.766660.027
42DAP/reference0.844460.136
43DAP/reference0.807990.049
47DAP/reference1.136950.272
52DAP/reference0.858490.115
57DAP/reference0.78940.009

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.320140.139
17DAP/reference0.996420.642
27DAP/reference1.152920.757
39DAP/reference0.925250.298
41DAP/reference0.846340.173
42DAP/reference0.826270.055
43DAP/reference1.062970.929
47DAP/reference0.893120.09
52DAP/reference0.782440.02
57DAP/reference0.846720.278

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.013211
17DAP/reference1.003431
27DAP/reference1.028380.834
39DAP/reference0.921530.246
41DAP/reference0.856420.237
42DAP/reference0.922540.361
43DAP/reference0.800920.095
47DAP/reference0.891590.069
52DAP/reference1.093470.724
57DAP/reference0.929030.315

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.130560.966
26DAP/20DAP0.950831
34DAP/26DAP1.100360.819
51DAP/34DAP1.220680.171
52DAP/51DAP0.951161
53DAP/52DAP0.965070.868
55DAP/53DAP1.068120.938
57DAP/55DAP0.974480.821
62DAP/57DAP0.838360.088
68DAP/62DAP0.832440.543
68DAP/14DAP1.539730.487

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.82380.224

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.878320.491
Mature Green Tomato/Ripe Tomato0.51737
Immature Eggplant/Mature Eggplant1.351210.056
Ripe Pepper/Ripe Tomato0.64180.293
Mature Eggplant/Ripe Tomato0.653651

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.927080.638
1-1-2/M821.055061
12-2/M821.028411
12-4/M821.087461
1-3/M820.665470.378
2-1-1/M820.89182
2-1/M821.04574
2-6/M820.895650.501
3-2/M820.90255
4-1-1/M820.9845
4-1/M82N/AN/A
4-3-2/M821.068570.508
4-3/M820.699030.475
5-3/M821.111561
6-2/M820.630141
6-3/M820.995961
7-1/M82N/AN/A
7-2/M820.89534
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.747890.493
IL2-6/WTpooled1.369420.659
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.543630.839
IL1-4/WTpooled0.9757
WT/WTpooled0.992321

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.130761

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.957480.849
DC3000/delta hrp 6h0.922920.95
DC3000/delta hrp 12h0.988741
DC3000/delta hrp 24h0.953930.642

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.700880.042
DC3000 delta B/DC3000 delta AB0.802740.045

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.15680.196
Exp 36h0.832680.406
Exp 60h1.379340.221

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.001721
Var 0h1.138350.936
Var 12h I row2-row10.956850.77
Var 12h NI row2-row10.964090.82
Var 36h I row2-row10.923810.805
Var 36h NI row2-row10.925030.61
Var 60h I row2-row11.258860.562
Var 60h NI row2-row10.944160.516
Time course 0hI-0hNI0.990681
Time course 12hI-12hNI0.932510.464
Time course 36hI-36hNI0.867230.22
Time course 60hI-60hNI0.69990.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.818980.32
transgenic ySAMdc/azygous control (breaker)0.772130.131
transgenic ySAMdc/azygous control (red)0.964731

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.988290.227

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.936710.308

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.916511
Manapal/WT (break)0.947871
Manapal/WT (red)0.850410.181