Expression of 1-1-8.2.11.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.912150.532
27DAP/17DAP1.13940.881
39DAP/27DAP0.936840.652
41DAP/39DAP1.401640.408
42DAP/41DAP0.919371
43DAP/42DAP0.918940.865
47DAP/43DAP1.258730.618
52DAP/47DAP1.575010.304
57DAP/52DAP0.973990.963

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.937760.402
17DAP/reference0.921610.278
27DAP/reference1.021650.88
39DAP/reference0.979420.75
41DAP/reference0.964630.542
42DAP/reference0.887740.004
43DAP/reference0.998750.942
47DAP/reference0.933690.071
52DAP/reference0.894370.3
57DAP/reference0.858260.025

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.868410.251
27DAP/17DAP1.038070.954
39DAP/27DAP1.05370.663
41DAP/39DAP1.121720.753
42DAP/41DAP0.961770.721
43DAP/42DAP0.843420.043
47DAP/43DAP1.083570.822
52DAP/47DAP0.917810.729
57DAP/52DAP0.928540.528
57DAP/7DAP1.183231

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.831470.078
17DAP/reference0.792790.02
27DAP/reference0.76080.025
39DAP/reference0.813170.064
41DAP/reference0.762560.032
42DAP/reference0.760.058
43DAP/reference0.6790.016
47DAP/reference0.766060.101
52DAP/reference0.68750.015
57DAP/reference0.771450.011

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.026550.812
17DAP/reference1.000810.851
27DAP/reference0.880290.22
39DAP/reference0.856490.102
41DAP/reference0.815330.047
42DAP/reference0.91410.027
43DAP/reference1.053170.761
47DAP/reference0.943150.105
52DAP/reference0.995040.619
57DAP/reference1.125230.097

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.796260.035
17DAP/reference0.937050.407
27DAP/reference0.7490.032
39DAP/reference0.783330.021
41DAP/reference0.751360.032
42DAP/reference0.741210.059
43DAP/reference0.644650.023
47DAP/reference0.899940.191
52DAP/reference0.833510.238
57DAP/reference0.538430.017

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.019070.966
26DAP/20DAP0.992111
34DAP/26DAP1.037040.819
51DAP/34DAP0.947110.624
52DAP/51DAP1.047080.77
53DAP/52DAP0.98952
55DAP/53DAP1.194390.046
57DAP/55DAP0.992010.909
62DAP/57DAP1.236240.935
68DAP/62DAP0.890980.609
68DAP/14DAP1.305610.541

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.927630.399

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.740810.207
Mature Green Tomato/Ripe Tomato1.107830.881
Immature Eggplant/Mature Eggplant1.771680.05
Ripe Pepper/Ripe Tomato5.465250.256
Mature Eggplant/Ripe Tomato1.912550.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.93180.944
1-1-2/M820.947741
12-2/M821.04771
12-4/M820.929791
1-3/M820.796740.501
2-1-1/M820.987711
2-1/M821.446830.175
2-6/M821.052761
3-2/M820.83591
4-1-1/M820.974091
4-1/M820.962571
4-3-2/M820.776460.487
4-3/M820.986111
5-3/M821.044741
6-2/M820.950421
6-3/M821.024081
7-1/M820.94274
7-2/M821.146540.385
9-3-2/M820.823820.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.21580.277
IL2-6/WTpooled0.730851
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.182651
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.912841
WT/WTpooled0.919161

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.137561

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.978451
DC3000/delta hrp 6h0.925390.95
DC3000/delta hrp 12h1.109121
DC3000/delta hrp 24h0.895750.447

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.286980.042
DC3000 delta B/DC3000 delta AB1.057760.516

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.296390.228
Exp 36h1.275970.693
Exp 60h1.592440.227

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.996171
Var 0h1.067710.782
Var 12h I row2-row11.047260.692
Var 12h NI row2-row10.827090.82
Var 36h I row2-row11.098080.298
Var 36h NI row2-row10.869660.549
Var 60h I row2-row11.225960.562
Var 60h NI row2-row11.008131
Time course 0hI-0hNI1.169230.764
Time course 12hI-12hNI1.161310.122
Time course 36hI-36hNI1.429450.005
Time course 60hI-60hNI1.998310.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.172690.482
transgenic ySAMdc/azygous control (breaker)0.890650.251
transgenic ySAMdc/azygous control (red)0.978941

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.018310.261

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.511680.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.163960.307
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.904030.187