Expression of 1-1-8.2.11.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91215 | 0.532 |
27DAP/17DAP | 1.1394 | 0.881 |
39DAP/27DAP | 0.93684 | 0.652 |
41DAP/39DAP | 1.40164 | 0.408 |
42DAP/41DAP | 0.91937 | 1 |
43DAP/42DAP | 0.91894 | 0.865 |
47DAP/43DAP | 1.25873 | 0.618 |
52DAP/47DAP | 1.57501 | 0.304 |
57DAP/52DAP | 0.97399 | 0.963 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93776 | 0.402 |
17DAP/reference | 0.92161 | 0.278 |
27DAP/reference | 1.02165 | 0.88 |
39DAP/reference | 0.97942 | 0.75 |
41DAP/reference | 0.96463 | 0.542 |
42DAP/reference | 0.88774 | 0.004 |
43DAP/reference | 0.99875 | 0.942 |
47DAP/reference | 0.93369 | 0.071 |
52DAP/reference | 0.89437 | 0.3 |
57DAP/reference | 0.85826 | 0.025 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.86841 | 0.251 |
27DAP/17DAP | 1.03807 | 0.954 |
39DAP/27DAP | 1.0537 | 0.663 |
41DAP/39DAP | 1.12172 | 0.753 |
42DAP/41DAP | 0.96177 | 0.721 |
43DAP/42DAP | 0.84342 | 0.043 |
47DAP/43DAP | 1.08357 | 0.822 |
52DAP/47DAP | 0.91781 | 0.729 |
57DAP/52DAP | 0.92854 | 0.528 |
57DAP/7DAP | 1.18323 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83147 | 0.078 |
17DAP/reference | 0.79279 | 0.02 |
27DAP/reference | 0.7608 | 0.025 |
39DAP/reference | 0.81317 | 0.064 |
41DAP/reference | 0.76256 | 0.032 |
42DAP/reference | 0.76 | 0.058 |
43DAP/reference | 0.679 | 0.016 |
47DAP/reference | 0.76606 | 0.101 |
52DAP/reference | 0.6875 | 0.015 |
57DAP/reference | 0.77145 | 0.011 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02655 | 0.812 |
17DAP/reference | 1.00081 | 0.851 |
27DAP/reference | 0.88029 | 0.22 |
39DAP/reference | 0.85649 | 0.102 |
41DAP/reference | 0.81533 | 0.047 |
42DAP/reference | 0.9141 | 0.027 |
43DAP/reference | 1.05317 | 0.761 |
47DAP/reference | 0.94315 | 0.105 |
52DAP/reference | 0.99504 | 0.619 |
57DAP/reference | 1.12523 | 0.097 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.79626 | 0.035 |
17DAP/reference | 0.93705 | 0.407 |
27DAP/reference | 0.749 | 0.032 |
39DAP/reference | 0.78333 | 0.021 |
41DAP/reference | 0.75136 | 0.032 |
42DAP/reference | 0.74121 | 0.059 |
43DAP/reference | 0.64465 | 0.023 |
47DAP/reference | 0.89994 | 0.191 |
52DAP/reference | 0.83351 | 0.238 |
57DAP/reference | 0.53843 | 0.017 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01907 | 0.966 |
26DAP/20DAP | 0.99211 | 1 |
34DAP/26DAP | 1.03704 | 0.819 |
51DAP/34DAP | 0.94711 | 0.624 |
52DAP/51DAP | 1.04708 | 0.77 |
53DAP/52DAP | 0.98952 | |
55DAP/53DAP | 1.19439 | 0.046 |
57DAP/55DAP | 0.99201 | 0.909 |
62DAP/57DAP | 1.23624 | 0.935 |
68DAP/62DAP | 0.89098 | 0.609 |
68DAP/14DAP | 1.30561 | 0.541 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.92763 | 0.399 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.74081 | 0.207 |
Mature Green Tomato/Ripe Tomato | 1.10783 | 0.881 |
Immature Eggplant/Mature Eggplant | 1.77168 | 0.05 |
Ripe Pepper/Ripe Tomato | 5.46525 | 0.256 |
Mature Eggplant/Ripe Tomato | 1.91255 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.9318 | 0.944 |
1-1-2/M82 | 0.94774 | 1 |
12-2/M82 | 1.0477 | 1 |
12-4/M82 | 0.92979 | 1 |
1-3/M82 | 0.79674 | 0.501 |
2-1-1/M82 | 0.98771 | 1 |
2-1/M82 | 1.44683 | 0.175 |
2-6/M82 | 1.05276 | 1 |
3-2/M82 | 0.8359 | 1 |
4-1-1/M82 | 0.97409 | 1 |
4-1/M82 | 0.96257 | 1 |
4-3-2/M82 | 0.77646 | 0.487 |
4-3/M82 | 0.98611 | 1 |
5-3/M82 | 1.04474 | 1 |
6-2/M82 | 0.95042 | 1 |
6-3/M82 | 1.02408 | 1 |
7-1/M82 | 0.94274 | |
7-2/M82 | 1.14654 | 0.385 |
9-3-2/M82 | 0.82382 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.2158 | 0.277 |
IL2-6/WTpooled | 0.73085 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.18265 | 1 |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.91284 | 1 |
WT/WTpooled | 0.91916 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.13756 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97845 | 1 |
DC3000/delta hrp 6h | 0.92539 | 0.95 |
DC3000/delta hrp 12h | 1.10912 | 1 |
DC3000/delta hrp 24h | 0.89575 | 0.447 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.28698 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.05776 | 0.516 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.29639 | 0.228 |
Exp 36h | 1.27597 | 0.693 |
Exp 60h | 1.59244 | 0.227 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99617 | 1 |
Var 0h | 1.06771 | 0.782 |
Var 12h I row2-row1 | 1.04726 | 0.692 |
Var 12h NI row2-row1 | 0.82709 | 0.82 |
Var 36h I row2-row1 | 1.09808 | 0.298 |
Var 36h NI row2-row1 | 0.86966 | 0.549 |
Var 60h I row2-row1 | 1.22596 | 0.562 |
Var 60h NI row2-row1 | 1.00813 | 1 |
Time course 0hI-0hNI | 1.16923 | 0.764 |
Time course 12hI-12hNI | 1.16131 | 0.122 |
Time course 36hI-36hNI | 1.42945 | 0.005 |
Time course 60hI-60hNI | 1.99831 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.17269 | 0.482 |
transgenic ySAMdc/azygous control (breaker) | 0.89065 | 0.251 |
transgenic ySAMdc/azygous control (red) | 0.97894 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01831 | 0.261 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.51168 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.16396 | 0.307 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 0.90403 | 0.187 |
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